Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002370A_C01 KMC002370A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567350.1| lipase-like protein; protein id: At4g10050.1, s... 75 3e-13
pir||T04009 hypothetical protein T5L19.180 - Arabidopsis thalian... 54 1e-06
gb|AAK26245.1| elongation factor 3 [Cryptococcus neoformans var.... 33 1.4
ref|NP_057231.1| protein phosphatase methylesterase-1 [Homo sapi... 32 5.4
ref|XP_133657.1| RIKEN cDNA 2700017M01 [Mus musculus] gi|1592881... 32 5.4
>ref|NP_567350.1| lipase-like protein; protein id: At4g10050.1, supported by cDNA:
6822., supported by cDNA: gi_14423411, supported by
cDNA: gi_20148342 [Arabidopsis thaliana]
gi|14423412|gb|AAK62388.1|AF386943_1 lipase-like protein
[Arabidopsis thaliana] gi|20148343|gb|AAM10062.1|
lipase-like protein [Arabidopsis thaliana]
Length = 350
Score = 75.5 bits (184), Expect = 3e-13
Identities = 33/42 (78%), Positives = 38/42 (89%)
Frame = -1
Query: 508 RHTGHAIQEDVPDEFATLITNFISRNRIEPHGVEIPGLRKPA 383
+HTGHAIQEDVP+EFA L+ NFISRNRI PHGVEIPG+ KP+
Sbjct: 304 KHTGHAIQEDVPEEFANLVLNFISRNRIGPHGVEIPGMWKPS 345
>pir||T04009 hypothetical protein T5L19.180 - Arabidopsis thaliana
gi|4539008|emb|CAB39629.1| lipase-like protein
[Arabidopsis thaliana] gi|7267701|emb|CAB78128.1|
lipase-like protein [Arabidopsis thaliana]
Length = 308
Score = 53.9 bits (128), Expect = 1e-06
Identities = 24/31 (77%), Positives = 27/31 (86%)
Frame = -1
Query: 490 IQEDVPDEFATLITNFISRNRIEPHGVEIPG 398
IQEDVP+EFA L+ NFISRNRI PHGVE+ G
Sbjct: 261 IQEDVPEEFANLVLNFISRNRIGPHGVEVCG 291
>gb|AAK26245.1| elongation factor 3 [Cryptococcus neoformans var. neoformans]
Length = 1055
Score = 33.5 bits (75), Expect = 1.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 154 NCGLH*WRHSNLILIYYSSHFDHNIYNHFSYPAPPLKYV 270
N G W+H NL++ Y + H H+I NH + PL+Y+
Sbjct: 741 NLGGQVWKHPNLVIGYVAQHAFHHIDNHLD--STPLEYM 777
>ref|NP_057231.1| protein phosphatase methylesterase-1 [Homo sapiens]
gi|5533003|gb|AAD44976.1|AF157028_1 protein phosphatase
methylesterase-1 [Homo sapiens]
gi|12804371|gb|AAH03046.1|AAH03046 protein phosphatase
methylesterase-1 [Homo sapiens]
Length = 386
Score = 31.6 bits (70), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (62%), Gaps = 1/30 (3%)
Frame = -1
Query: 499 GHAIQEDVPDEFATLITNFISRNRI-EPHG 413
GHA+ ED PD+ A + F+ R+R EP G
Sbjct: 348 GHAVHEDAPDKVAEAVATFLIRHRFAEPIG 377
>ref|XP_133657.1| RIKEN cDNA 2700017M01 [Mus musculus] gi|15928814|gb|AAH14867.1|
Similar to protein phosphatase methylesterase-1 [Mus
musculus]
Length = 386
Score = 31.6 bits (70), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (62%), Gaps = 1/30 (3%)
Frame = -1
Query: 499 GHAIQEDVPDEFATLITNFISRNRI-EPHG 413
GHA+ ED PD+ A + F+ R+R EP G
Sbjct: 348 GHAVHEDAPDKVAEAVATFLIRHRFAEPIG 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,601,389
Number of Sequences: 1393205
Number of extensions: 8472357
Number of successful extensions: 14279
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14270
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
