Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002366A_C01 KMC002366A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA77358.1| DNA-binding protein NtWRKY3 [Nicotiana tabacum] 80 3e-18
dbj|BAB16432.1| WRKY transcription factor Nt-SubD48 [Nicotiana t... 77 8e-17
pir||S72445 DNA-binding protein WRKY3 - parsley gi|1432056|gb|AA... 77 8e-17
ref|NP_680752.1| WRKY family transcription factor; protein id: A... 76 1e-16
ref|NP_567878.2| WRKY family transcription factor; protein id: A... 76 1e-16
>dbj|BAA77358.1| DNA-binding protein NtWRKY3 [Nicotiana tabacum]
Length = 328
Score = 79.7 bits (195), Expect(2) = 3e-18
Identities = 35/40 (87%), Positives = 36/40 (89%)
Frame = -3
Query: 391 RGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGEHRHLI 272
RGYYKCSS +GCPARKHVERA DDP MLIVTYEGEHRH I
Sbjct: 268 RGYYKCSSVRGCPARKHVERAMDDPAMLIVTYEGEHRHTI 307
Score = 33.5 bits (75), Expect(2) = 3e-18
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 549 YGQKPIKGSPYPR 511
YGQKPIKGSPYPR
Sbjct: 256 YGQKPIKGSPYPR 268
>dbj|BAB16432.1| WRKY transcription factor Nt-SubD48 [Nicotiana tabacum]
Length = 350
Score = 76.6 bits (187), Expect(2) = 8e-17
Identities = 33/38 (86%), Positives = 34/38 (88%)
Frame = -3
Query: 391 RGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGEHRH 278
RGYYKCSS +GCPARKHVERA DDP MLIVTYEGEH H
Sbjct: 297 RGYYKCSSVRGCPARKHVERALDDPTMLIVTYEGEHNH 334
Score = 31.6 bits (70), Expect(2) = 8e-17
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = -1
Query: 549 YGQKPIKGSPYPR 511
YGQKPIKGSP+PR
Sbjct: 285 YGQKPIKGSPHPR 297
>pir||S72445 DNA-binding protein WRKY3 - parsley gi|1432056|gb|AAC49528.1| WRKY3
[Petroselinum crispum]
Length = 341
Score = 76.6 bits (187), Expect(2) = 8e-17
Identities = 33/38 (86%), Positives = 34/38 (88%)
Frame = -3
Query: 391 RGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGEHRH 278
RGYYKCSS +GCPARKHVERA DDP MLIVTYEGEH H
Sbjct: 282 RGYYKCSSVRGCPARKHVERAVDDPTMLIVTYEGEHNH 319
Score = 31.6 bits (70), Expect(2) = 8e-17
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = -1
Query: 549 YGQKPIKGSPYPR 511
YGQKPIKGSP+PR
Sbjct: 270 YGQKPIKGSPHPR 282
>ref|NP_680752.1| WRKY family transcription factor; protein id: At4g31550.1,
supported by cDNA: 11953., supported by cDNA:
gi_16604572 [Arabidopsis thaliana]
gi|23297314|gb|AAN12939.1| putative DNA-binding protein
[Arabidopsis thaliana]
Length = 325
Score = 76.3 bits (186), Expect(2) = 1e-16
Identities = 33/38 (86%), Positives = 35/38 (91%)
Frame = -3
Query: 391 RGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGEHRH 278
RGYYKCS+ +GCPARKHVERA DDP MLIVTYEGEHRH
Sbjct: 266 RGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRH 303
Score = 31.6 bits (70), Expect(2) = 1e-16
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = -1
Query: 549 YGQKPIKGSPYPR 511
YGQKPIKGSP+PR
Sbjct: 254 YGQKPIKGSPHPR 266
>ref|NP_567878.2| WRKY family transcription factor; protein id: At4g31550.2,
supported by cDNA: gi_15384214 [Arabidopsis thaliana]
gi|7484935|pir||T10685 DNA-binding protein WRKY3 homolog
F3L17.120 - Arabidopsis thaliana
gi|5262766|emb|CAB45914.1| putaive DNA-binding protein
[Arabidopsis thaliana] gi|7270058|emb|CAB79873.1|
putaive DNA-binding protein [Arabidopsis thaliana]
gi|15384215|gb|AAK96194.1|AF404856_1 WRKY transcription
factor 11 [Arabidopsis thaliana]
gi|24762195|gb|AAN64164.1| putative WRKY family
transcription factor [Arabidopsis thaliana]
Length = 324
Score = 76.3 bits (186), Expect(2) = 1e-16
Identities = 33/38 (86%), Positives = 35/38 (91%)
Frame = -3
Query: 391 RGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGEHRH 278
RGYYKCS+ +GCPARKHVERA DDP MLIVTYEGEHRH
Sbjct: 265 RGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRH 302
Score = 31.6 bits (70), Expect(2) = 1e-16
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = -1
Query: 549 YGQKPIKGSPYPR 511
YGQKPIKGSP+PR
Sbjct: 253 YGQKPIKGSPHPR 265
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,549,770
Number of Sequences: 1393205
Number of extensions: 10842334
Number of successful extensions: 31584
Number of sequences better than 10.0: 226
Number of HSP's better than 10.0 without gapping: 29870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31543
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
