Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002364A_C01 KMC002364A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans] 41 0.008
pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 37 0.15
gb|EAA19890.1| hypothetical protein [Plasmodium yoelii yoelii] 34 0.75
pir||T21697 hypothetical protein F40E10.6 - Caenorhabditis elegans 34 0.98
gb|EAA22870.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium y... 34 0.98
>gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans]
Length = 212
Score = 40.8 bits (94), Expect = 0.008
Identities = 37/143 (25%), Positives = 56/143 (38%), Gaps = 4/143 (2%)
Frame = -2
Query: 472 FILHSF-LASICVLFFCFHCHFLGSFSIIVFLCNIFISIF*DRFLPPFCISFIVSHTRDL 296
F+L F L + LF F C FL + FL +F+ F + +C+ F
Sbjct: 70 FLLFDFELCLLYCLFLMFMCFFLLFCCLDFFLYFVFLGFF---YFLMYCLFFF------- 119
Query: 295 SF*ELGQSHSFVFFFRSCSSFSSTNHLFWAACHSADPYLARFQLVCLFVCCWKVEHCTFL 116
SF F C F F+ C + F L C+++ CW+ C F+
Sbjct: 120 ---------SFFDFVFLCVVFCC----FFVFCFYGCLFFYFFNLDCVYL-CWRFFLCCFV 165
Query: 115 HFLVITETFWW---NFCYFNGMF 56
F ++ +W FC+F G F
Sbjct: 166 FFFMLLFFVFWVVLVFCFFVGFF 188
Score = 33.1 bits (74), Expect = 1.7
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = -1
Query: 476 LFHPSFFLGLYLCFVFLFSLPFSWF--IFHYCFSLQHLYLHFLRSISATLLHFLHCVTHT 303
LF SFF ++LC VF F ++ +F Y F+L +YL + + + F+
Sbjct: 116 LFFFSFFDFVFLCVVFCCFFVFCFYGCLFFYFFNLDCVYLCWRFFLCCFVFFFM------ 169
Query: 302 *FIFLRVGSIS*FCLFLQILLVILFDQSFVLGCMSLC*PVSSKVSTGLFVCLLL 141
+F + FC F+ +V+L+ + + + G F CL+L
Sbjct: 170 -LLFFVFWVVLVFCFFVGFFVVVLWYRLY--------------LKLGYFFCLIL 208
>pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Crithidia
oncopelti mitochondrion gi|12882|emb|CAA39492.1| NADH
dehydrogenase subunit 5 [Crithidia oncopelti]
Length = 590
Score = 36.6 bits (83), Expect = 0.15
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Frame = -1
Query: 458 FLGLYLCFVFLFSLPFSWFIF---HYCFSLQHLYLHFLRSISATLLHFLHCVTHT*FIFL 288
FLGLY+CF+ +F + +IF YC YL++ +F + T F+ +
Sbjct: 460 FLGLYMCFILIFFVIDFLYIFVFSSYCM-FWSFYLYY--------FNFFDIASFTVFVMI 510
Query: 287 RVGSIS*FCL---FLQILLVILFDQSFVLGCMSLC*PVSSKVSTGLFVCLLLES*TLYFS 117
+ I C+ F + ++LF + F++ C+ T F
Sbjct: 511 SLAFIYYGCVLFYFFNVDCIMLFWRIFLIICV-----------------------TFMFG 547
Query: 116 AFPC-HYRDFLVEFLLFQWD 60
F C ++ F + LLF W+
Sbjct: 548 LFSCWYFACFFIYLLLFVWN 567
>gb|EAA19890.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 810
Score = 34.3 bits (77), Expect = 0.75
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 356 KNGDKDVAEKNNNGK*TKKMAMKTKKQNTDRGQERMKDEKVK 481
KNG K V EKN+ K +A K +N D+ ++ K++K+K
Sbjct: 154 KNGSKKVKEKNSKEKEENGIAEKKSHKNGDKSKKAAKEKKIK 195
>pir||T21697 hypothetical protein F40E10.6 - Caenorhabditis elegans
Length = 595
Score = 33.9 bits (76), Expect = 0.98
Identities = 17/52 (32%), Positives = 25/52 (47%), Gaps = 6/52 (11%)
Frame = -1
Query: 470 HPSFFLGLYLCFV------FLFSLPFSWFIFHYCFSLQHLYLHFLRSISATL 333
H SF+ L+ F FLF PF +F + F L +L+F + AT+
Sbjct: 150 HLSFYFSLFFAFFLPFHSPFLFQFPFHFFCVSFLFFLDVFFLYFQSTFGATI 201
>gb|EAA22870.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 1336
Score = 33.9 bits (76), Expect = 0.98
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 297 KSRVCDTMKEMQKGGRNRS*KMEIKMLQRKTIMENEPRKWQ*KQKN-KTQIEAKKE 461
++++ DT KE QKG N+ K + Q K I EN+P+K Q Q++ K Q + +E
Sbjct: 798 ENKIVDTKKEPQKGQENQPQKGQEN--QPKKIQENQPKKGQENQESQKNQAQKSQE 851
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,073,519
Number of Sequences: 1393205
Number of extensions: 9124162
Number of successful extensions: 35643
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 33640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35474
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
