Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002360A_C01 KMC002360A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42861.1| unknown protein [Arabidopsis thaliana] 71 6e-12
ref|NP_567593.1| expressed protein; protein id: At4g20010.1, sup... 71 6e-12
ref|NP_568639.1| Expressed protein; protein id: At5g44785.1, sup... 64 1e-09
gb|AAM61481.1| unknown [Arabidopsis thaliana] 64 1e-09
ref|NP_564370.1| expressed protein; protein id: At1g31010.1, sup... 61 7e-09
>dbj|BAC42861.1| unknown protein [Arabidopsis thaliana]
Length = 371
Score = 70.9 bits (172), Expect = 6e-12
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 470 RLNKRNVKAPDFKHQETGEGLWVDASPNWVLPKLPPVK 357
R++KRN KAPDFKH+ETGE LW++ SP WVLPKLPPVK
Sbjct: 326 RIDKRNAKAPDFKHKETGEALWLNESPTWVLPKLPPVK 363
Score = 42.0 bits (97), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (70%)
Frame = -1
Query: 443 PDFKHQETGEGLWVDASPNWVLPKLPPVKLEPSVP 339
PDFK +++ LW++ +PNWVLPKL ++ + VP
Sbjct: 264 PDFKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVP 298
>ref|NP_567593.1| expressed protein; protein id: At4g20010.1, supported by cDNA:
40232. [Arabidopsis thaliana] gi|7485726|pir||T04885
hypothetical protein F18F4.110 - Arabidopsis thaliana
gi|2827655|emb|CAA16609.1| hypothetical protein
[Arabidopsis thaliana] gi|7268796|emb|CAB79001.1|
hypothetical protein [Arabidopsis thaliana]
Length = 371
Score = 70.9 bits (172), Expect = 6e-12
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 470 RLNKRNVKAPDFKHQETGEGLWVDASPNWVLPKLPPVK 357
R++KRN KAPDFKH+ETGE LW++ SP WVLPKLPPVK
Sbjct: 326 RIDKRNAKAPDFKHKETGEALWLNESPTWVLPKLPPVK 363
Score = 42.0 bits (97), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (70%)
Frame = -1
Query: 443 PDFKHQETGEGLWVDASPNWVLPKLPPVKLEPSVP 339
PDFK +++ LW++ +PNWVLPKL ++ + VP
Sbjct: 264 PDFKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVP 298
>ref|NP_568639.1| Expressed protein; protein id: At5g44785.1, supported by cDNA:
121432. [Arabidopsis thaliana]
gi|26452626|dbj|BAC43396.1| unknown protein [Arabidopsis
thaliana] gi|28973013|gb|AAO63831.1| unknown protein
[Arabidopsis thaliana]
Length = 440
Score = 63.5 bits (153), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = -1
Query: 470 RLNKRNVKAPDFKHQETGEGLWVDASPNWVLPKLPPVKLEPSVP 339
RL+KRN K PDFKH+ETGE LW+ SP W L KLPP+K P
Sbjct: 394 RLDKRNPKGPDFKHKETGEALWIGDSPTWALSKLPPLKKNQERP 437
Score = 60.8 bits (146), Expect = 7e-09
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = -1
Query: 470 RLNKRNVKAPDFKHQETGEGLWVDASPNWVLPKLPPVKLEPSVPTSSKQ 324
R +K NVK PDFKH+ETGE LW+ SP WVL KLPP+K P S +
Sbjct: 308 RSDKTNVKYPDFKHKETGEALWMTNSPIWVLSKLPPLKKNQERPFMSNK 356
Score = 35.8 bits (81), Expect = 0.23
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = -1
Query: 443 PDFKHQETGEGLWVDASPNWVLPKLPPVKLEPSVP 339
PDFK + G LW+ +P+W L KL +K + VP
Sbjct: 245 PDFKMKVGGLSLWLSTAPDWALLKLEELKFDVLVP 279
>gb|AAM61481.1| unknown [Arabidopsis thaliana]
Length = 440
Score = 63.5 bits (153), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = -1
Query: 470 RLNKRNVKAPDFKHQETGEGLWVDASPNWVLPKLPPVKLEPSVP 339
RL+KRN K PDFKH+ETGE LW+ SP W L KLPP+K P
Sbjct: 394 RLDKRNPKGPDFKHKETGEALWIGDSPTWALSKLPPLKKNQERP 437
Score = 61.2 bits (147), Expect = 5e-09
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = -1
Query: 470 RLNKRNVKAPDFKHQETGEGLWVDASPNWVLPKLPPVKLEPSVPTSSKQ 324
R +K NVK PDFKH+ETGE LW+ SP WVL KLPP+K P S +
Sbjct: 308 RSDKTNVKYPDFKHKETGEALWMTNSPIWVLSKLPPLKKNQERPLMSNK 356
Score = 35.8 bits (81), Expect = 0.23
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = -1
Query: 443 PDFKHQETGEGLWVDASPNWVLPKLPPVKLEPSVP 339
PDFK + G LW+ +P+W L KL +K + VP
Sbjct: 245 PDFKMKVGGLSLWLSTAPDWALLKLEELKFDVLVP 279
>ref|NP_564370.1| expressed protein; protein id: At1g31010.1, supported by cDNA:
25903. [Arabidopsis thaliana] gi|25341922|pir||G86435
protein F17F8.7 [imported] - Arabidopsis thaliana
gi|9755375|gb|AAF98182.1|AC000107_5 F17F8.7 [Arabidopsis
thaliana]
Length = 360
Score = 60.8 bits (146), Expect = 7e-09
Identities = 26/42 (61%), Positives = 33/42 (77%)
Frame = -1
Query: 470 RLNKRNVKAPDFKHQETGEGLWVDASPNWVLPKLPPVKLEPS 345
R++KR K+PDFKH+ETG GLW+ SP+WVL KLPP K + S
Sbjct: 310 RVDKRTPKSPDFKHKETGVGLWLSDSPSWVLEKLPPPKSKTS 351
Score = 34.7 bits (78), Expect = 0.51
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -1
Query: 455 NVKAPDFKHQETGEGLWVDASPNWVLPKLPPVKLEPSVPTSSKQ 324
N K PDFK ++ + LW++ +P +L +L VK + +P +KQ
Sbjct: 247 NPKHPDFKKKDGSQALWLNNAPTEILSELKDVKFD--IPKYAKQ 288
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,310,626
Number of Sequences: 1393205
Number of extensions: 7291839
Number of successful extensions: 20225
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 19639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20211
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
