Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002358A_C03 KMC002358A_c03
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9M4S8|TPIC_FRAAN Triosephosphate isomerase, chloroplast prec... 180 1e-44
ref|NP_179713.1| putative triosephosphate isomerase; protein id:... 179 2e-44
sp|P48496|TPIC_SPIOL Triosephosphate isomerase, chloroplast prec... 179 3e-44
sp|P48497|TPIS_STELP Triosephosphate isomerase, cytosolic (TIM) ... 172 3e-42
sp|P46225|TPIC_SECCE Triosephosphate isomerase, chloroplast prec... 167 1e-40
>sp|Q9M4S8|TPIC_FRAAN Triosephosphate isomerase, chloroplast precursor (TIM)
gi|7650502|gb|AAF66071.1|AF257322_1 triosephosphate
isomerase [Fragaria x ananassa]
Length = 314
Score = 180 bits (456), Expect = 1e-44
Identities = 85/100 (85%), Positives = 96/100 (96%)
Frame = -2
Query: 601 SWDNIVIAYEPVWAIGTGKVASPEQAQEVHAAIRDWLQKNVSAEVASKTRIIYGGSVNGG 422
SW+NIV+AYEPVWAIGTGKVASP+QAQEVH A+R+WL+KNVSAEVASKTRIIYGGSVNGG
Sbjct: 215 SWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGG 274
Query: 421 NSSELAKKEDIDGFLVGGASLKGPEFATIINSVTSQHTVA 302
NS+ELAK+EDIDGFLVGGASLKGPEFATI+N+VTS+ A
Sbjct: 275 NSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKKVAA 314
>ref|NP_179713.1| putative triosephosphate isomerase; protein id: At2g21170.1,
supported by cDNA: 39351., supported by cDNA:
gi_14190440, supported by cDNA: gi_15450568, supported
by cDNA: gi_7839390 [Arabidopsis thaliana]
gi|13431953|sp|Q9SKP6|TPIC_ARATH Triosephosphate
isomerase, chloroplast precursor (TIM)
gi|25292549|pir||A84598 probable triosephosphate
isomerase [imported] - Arabidopsis thaliana
gi|4803926|gb|AAD29799.1| putative triosephosphate
isomerase [Arabidopsis thaliana]
gi|7839391|gb|AAF70259.1|AF247559_1 triosephosphate
isomerase [Arabidopsis thaliana]
gi|14190441|gb|AAK55701.1|AF378898_1 At2g21170/F26H11.7
[Arabidopsis thaliana] gi|15450569|gb|AAK96462.1|
At2g21170/F26H11.7 [Arabidopsis thaliana]
gi|21593477|gb|AAM65444.1| putative triosephosphate
isomerase [Arabidopsis thaliana]
Length = 315
Score = 179 bits (455), Expect = 2e-44
Identities = 86/100 (86%), Positives = 94/100 (94%)
Frame = -2
Query: 601 SWDNIVIAYEPVWAIGTGKVASPEQAQEVHAAIRDWLQKNVSAEVASKTRIIYGGSVNGG 422
SWDNIV+AYEPVWAIGTGKVASP+QAQEVH A+R WL+KNVS EVASKTRIIYGGSVNGG
Sbjct: 216 SWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGG 275
Query: 421 NSSELAKKEDIDGFLVGGASLKGPEFATIINSVTSQHTVA 302
NS+ELAK+EDIDGFLVGGASLKGPEFATI+NSVTS+ A
Sbjct: 276 NSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 315
>sp|P48496|TPIC_SPIOL Triosephosphate isomerase, chloroplast precursor (TIM)
gi|1084309|pir||S52032 triose-phosphate isomerase (EC
5.3.1.1) precursor, chloroplast - spinach
gi|806312|gb|AAA66289.1| triosephosphate isomerase,
chloroplast isozyme
Length = 322
Score = 179 bits (453), Expect = 3e-44
Identities = 84/100 (84%), Positives = 94/100 (94%)
Frame = -2
Query: 601 SWDNIVIAYEPVWAIGTGKVASPEQAQEVHAAIRDWLQKNVSAEVASKTRIIYGGSVNGG 422
SWDN+V+AYEPVWAIGTGKVASP+QAQEVH A+RDWL+KNVS EVASKTRIIYGGSVNGG
Sbjct: 223 SWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGG 282
Query: 421 NSSELAKKEDIDGFLVGGASLKGPEFATIINSVTSQHTVA 302
N +ELAK+EDIDGFLVGGASLKGPEFATI+NSVT++ A
Sbjct: 283 NCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTAKKVAA 322
>sp|P48497|TPIS_STELP Triosephosphate isomerase, cytosolic (TIM) gi|546735|gb|AAB30759.1|
triose phosphate isomerase; TPI [Stellaria longipes]
Length = 257
Score = 172 bits (436), Expect = 3e-42
Identities = 82/99 (82%), Positives = 90/99 (90%)
Frame = -2
Query: 598 WDNIVIAYEPVWAIGTGKVASPEQAQEVHAAIRDWLQKNVSAEVASKTRIIYGGSVNGGN 419
WDN+V+AYEPVWAIGTGKVASPEQAQEVH A+RDWL+ NVS EVASKTRIIYGGSVNGGN
Sbjct: 159 WDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGN 218
Query: 418 SSELAKKEDIDGFLVGGASLKGPEFATIINSVTSQHTVA 302
S LA +ED+DGFLVGGASLKGPEFATIINSVT++ A
Sbjct: 219 SLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKKVAA 257
>sp|P46225|TPIC_SECCE Triosephosphate isomerase, chloroplast precursor (TIM)
gi|1363523|pir||S53761 triose-phosphate isomerase (EC
5.3.1.1) precursor, chloroplast - rye
gi|609262|emb|CAA83533.1| triosephosphate isomerase
[Secale cereale] gi|1095494|prf||2109226B
triosephosphate isomerase
Length = 298
Score = 167 bits (423), Expect = 1e-40
Identities = 81/99 (81%), Positives = 88/99 (88%)
Frame = -2
Query: 598 WDNIVIAYEPVWAIGTGKVASPEQAQEVHAAIRDWLQKNVSAEVASKTRIIYGGSVNGGN 419
W N+VIAYEPVWAIGTGKVASPEQAQEVHAA+RDWL+ NVSA+VAS RIIYGGSVN N
Sbjct: 200 WTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAAN 259
Query: 418 SSELAKKEDIDGFLVGGASLKGPEFATIINSVTSQHTVA 302
+ELAKKEDIDGFLVGGASLKGP+FATI NSVTS+ A
Sbjct: 260 CAELAKKEDIDGFLVGGASLKGPDFATICNSVTSKKVTA 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,877,183
Number of Sequences: 1393205
Number of extensions: 10645101
Number of successful extensions: 26632
Number of sequences better than 10.0: 332
Number of HSP's better than 10.0 without gapping: 25787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26523
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
