Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002357A_C01 KMC002357A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL09802.1| AT5g56420/MCD7_18 [Arabidopsis thaliana] 49 3e-05
ref|NP_200453.1| F-box protein; protein id: At5g56420.1, support... 49 3e-05
ref|NP_564398.1| F-box protein; protein id: At1g32375.1 [Arabido... 49 3e-05
pir||F86448 F5D14.14 protein - Arabidopsis thaliana gi|8920612|g... 49 3e-05
ref|NP_198674.1| putative protein; protein id: At5g38580.1 [Arab... 47 8e-05
>gb|AAL09802.1| AT5g56420/MCD7_18 [Arabidopsis thaliana]
Length = 401
Score = 48.9 bits (115), Expect = 3e-05
Identities = 25/74 (33%), Positives = 42/74 (55%)
Frame = -2
Query: 430 IPECLTSQFRNCTLKNYQGTRCERLFAQDIMQHSTSLRTMKICSRSSLSTEAKHEMLKPL 251
+P+CL + Y+G++ ++ A I++H+ L+T I + + + KHEMLK L
Sbjct: 327 LPKCLLFHLETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPKPTSTLLEKHEMLKDL 386
Query: 250 ALCPRRSALCELSF 209
+ PR S+ CEL F
Sbjct: 387 SSSPRGSSTCELLF 400
>ref|NP_200453.1| F-box protein; protein id: At5g56420.1, supported by cDNA:
gi_15982910 [Arabidopsis thaliana]
gi|10177841|dbj|BAB11270.1|
emb|CAB62440.1~gene_id:MCD7.18~similar to unknown
protein [Arabidopsis thaliana]
Length = 422
Score = 48.9 bits (115), Expect = 3e-05
Identities = 25/74 (33%), Positives = 42/74 (55%)
Frame = -2
Query: 430 IPECLTSQFRNCTLKNYQGTRCERLFAQDIMQHSTSLRTMKICSRSSLSTEAKHEMLKPL 251
+P+CL + Y+G++ ++ A I++H+ L+T I + + + KHEMLK L
Sbjct: 348 LPKCLLFHLETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPKPTSTLLEKHEMLKDL 407
Query: 250 ALCPRRSALCELSF 209
+ PR S+ CEL F
Sbjct: 408 SSSPRGSSTCELLF 421
>ref|NP_564398.1| F-box protein; protein id: At1g32375.1 [Arabidopsis thaliana]
Length = 422
Score = 48.9 bits (115), Expect = 3e-05
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = -2
Query: 439 PQFIPECLTSQFRNCTLKNYQGTRCERLFAQDIMQHSTSLRTMKICSRSSLSTEAKHEML 260
P +PECL + Y+GT E+ A I++ + L+ + I S+S+ K EML
Sbjct: 346 PSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILRSGSCLKKVTISSKST-DINKKFEML 404
Query: 259 KPLALCPRRSALCELSF 209
K L+L RRS C+++F
Sbjct: 405 KELSLLFRRSPTCQIAF 421
>pir||F86448 F5D14.14 protein - Arabidopsis thaliana
gi|8920612|gb|AAF81334.1|AC007767_14 Contains similarity
to a hypothetical protein T25K17.150 gi|7487424 from
Arabidopsis thaliana BAC T25K17 gb|AL049171
Length = 536
Score = 48.9 bits (115), Expect = 3e-05
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = -2
Query: 439 PQFIPECLTSQFRNCTLKNYQGTRCERLFAQDIMQHSTSLRTMKICSRSSLSTEAKHEML 260
P +PECL + Y+GT E+ A I++ + L+ + I S+S+ K EML
Sbjct: 460 PSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILRSGSCLKKVTISSKST-DINKKFEML 518
Query: 259 KPLALCPRRSALCELSF 209
K L+L RRS C+++F
Sbjct: 519 KELSLLFRRSPTCQIAF 535
>ref|NP_198674.1| putative protein; protein id: At5g38580.1 [Arabidopsis thaliana]
gi|10176826|dbj|BAB10148.1|
gene_id:MBB18.13~pir||T06729~similar to unknown protein
[Arabidopsis thaliana]
Length = 168
Score = 47.4 bits (111), Expect = 8e-05
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = -2
Query: 439 PQFIPECLTSQFRNCTLKNYQGTRCERLFAQDIMQHSTSLRTMKICSRSSLSTEAKHEML 260
P F+PECL S + Y G + +R A I++++ L+T I + + +M+
Sbjct: 87 PNFVPECLLSSLQTLLWSRYFGRQQDRDIAVYILKNACHLKTATILADTDEHDVPNLQMI 146
Query: 259 KPLALCPRRSALCELSFI 206
K LAL R S +C+L F+
Sbjct: 147 KELALSLRTSVICQLVFV 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,635,942
Number of Sequences: 1393205
Number of extensions: 7411300
Number of successful extensions: 15753
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 15450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15737
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
