Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002356A_C02 KMC002356A_c02
(846 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563991.1| expressed protein; protein id: At1g16080.1, sup... 156 3e-37
>ref|NP_563991.1| expressed protein; protein id: At1g16080.1, supported by cDNA:
gi_12083327, supported by cDNA: gi_18176354 [Arabidopsis
thaliana] gi|25513631|pir||F86295 T24D18.18 protein -
Arabidopsis thaliana
gi|6587814|gb|AAF18505.1|AC010924_18 ESTs gb|AI992412,
gb|AI994629 come from this gene. [Arabidopsis thaliana]
gi|12083328|gb|AAG48823.1|AF332460_1 unknown protein
[Arabidopsis thaliana] gi|18176355|gb|AAL60029.1|
unknown protein [Arabidopsis thaliana]
Length = 313
Score = 156 bits (395), Expect = 3e-37
Identities = 76/110 (69%), Positives = 86/110 (78%)
Frame = -3
Query: 844 EKLIWICSVMLIGARHGGVSVGNVEKEFHLELCSLISELALAAASEKGLTFEEGMEDRMC 665
EKLIWIC+ ML+GARH G SVG VEKE+ E+ LI ELA AAA+EKGLTFEE M +R+C
Sbjct: 202 EKLIWICAFMLVGARHPGASVGTVEKEYRDEVSRLIQELAAAAAAEKGLTFEENMVERLC 261
Query: 664 AYSRAVAHFPTAVKEFKWRNGWFYSLSEKATAQGQHGSMPSAYSMAKRVK 515
AYSRAV+HFPTAVKEFKWRNGWFYSLSEKA A+GQ P K +K
Sbjct: 262 AYSRAVSHFPTAVKEFKWRNGWFYSLSEKAIAEGQPDPCPLHTEWLKELK 311
Score = 40.8 bits (94), Expect = 0.025
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -1
Query: 669 CVHTREL*PIFPLQLRSSNGGMVGFILFRRRLLPKASTDPCPLHTQWLKELKIV 508
C ++R + FP ++ F + + + DPCPLHT+WLKELK++
Sbjct: 261 CAYSRAV-SHFPTAVKEFKWRNGWFYSLSEKAIAEGQPDPCPLHTEWLKELKVI 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 725,857,738
Number of Sequences: 1393205
Number of extensions: 15674379
Number of successful extensions: 36587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36582
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
