Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002354A_C04 KMC002354A_c04
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN03474.1| syntaxin [Glycine max] 152 5e-36
pir||D71447 probable syntaxin - Arabidopsis thaliana 132 4e-30
ref|NP_568671.1| syntaxin SYP22 (VAM3); protein id: At5g46860.1,... 129 4e-29
dbj|BAA84625.1| unnamed protein product [Oryza sativa (japonica ... 123 2e-27
ref|NP_197185.1| syntaxin SYP21 (PEP12); protein id: At5g16830.1... 110 2e-23
>gb|AAN03474.1| syntaxin [Glycine max]
Length = 273
Score = 152 bits (383), Expect = 5e-36
Identities = 81/82 (98%), Positives = 81/82 (98%)
Frame = -1
Query: 663 EIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSS 484
EIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSS
Sbjct: 192 EIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSS 251
Query: 483 LACLLLVIFGIVLLIVIIVLAA 418
L CLLLVIFGIVLLIVIIVLAA
Sbjct: 252 LTCLLLVIFGIVLLIVIIVLAA 273
>pir||D71447 probable syntaxin - Arabidopsis thaliana
Length = 275
Score = 132 bits (332), Expect = 4e-30
Identities = 69/81 (85%), Positives = 76/81 (93%)
Frame = -1
Query: 663 EIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSS 484
EIQQQIGEV+EIFKDLAVLVH+QG MIDDIG++I+NS+AATAQ KS L KASKTQRSNSS
Sbjct: 194 EIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATAQGKSHLRKASKTQRSNSS 253
Query: 483 LACLLLVIFGIVLLIVIIVLA 421
L CLLLVIFGIVL+IVIIVLA
Sbjct: 254 LTCLLLVIFGIVLMIVIIVLA 274
>ref|NP_568671.1| syntaxin SYP22 (VAM3); protein id: At5g46860.1, supported by cDNA:
13184., supported by cDNA: gi_14326484, supported by
cDNA: gi_18086568, supported by cDNA: gi_1850545
[Arabidopsis thaliana] gi|28380153|sp|P93654|SY22_ARATH
Syntaxin 22 (AtSYP22) (AtVAM3) gi|1850546|gb|AAC49823.1|
syntaxin related protein AtVam3p [Arabidopsis thaliana]
gi|8809669|dbj|BAA97220.1| syntaxin related protein
AtVam3p [Arabidopsis thaliana]
gi|14326485|gb|AAK60288.1|AF385695_1 AT4g17730/dl4901w
[Arabidopsis thaliana] gi|18086569|gb|AAL57708.1|
AT4g17730/dl4901w [Arabidopsis thaliana]
gi|21537334|gb|AAM61675.1| syntaxin [Arabidopsis
thaliana] gi|22137302|gb|AAM91496.1| AT4g17730/dl4901w
[Arabidopsis thaliana]
Length = 268
Score = 129 bits (324), Expect = 4e-29
Identities = 67/82 (81%), Positives = 76/82 (91%)
Frame = -1
Query: 663 EIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSS 484
EI QQIGEVNEIFKDLAVLV++QG MIDDIG++I+NS AAT+Q KSQL +A+KTQ+SNSS
Sbjct: 187 EIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQLVQAAKTQKSNSS 246
Query: 483 LACLLLVIFGIVLLIVIIVLAA 418
L CLLLVIFGIVLLIVIIVLAA
Sbjct: 247 LTCLLLVIFGIVLLIVIIVLAA 268
>dbj|BAA84625.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|6016857|dbj|BAA85200.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 280
Score = 123 bits (309), Expect = 2e-27
Identities = 65/82 (79%), Positives = 73/82 (88%)
Frame = -1
Query: 663 EIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSS 484
EIQ QI EVNEIFKDLAVLVH+QG MIDDI ++IEN+ AT QAK QL+KA+KTQ+SNSS
Sbjct: 199 EIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATTQAKGQLSKAAKTQKSNSS 258
Query: 483 LACLLLVIFGIVLLIVIIVLAA 418
L CLLLVIFG+VLLIVIIVLAA
Sbjct: 259 LICLLLVIFGVVLLIVIIVLAA 280
>ref|NP_197185.1| syntaxin SYP21 (PEP12); protein id: At5g16830.1, supported by cDNA:
8257., supported by cDNA: gi_15724188, supported by
cDNA: gi_899121 [Arabidopsis thaliana]
gi|2501101|sp|Q39233|SY21_ARATH Syntaxin 21 (AtSYP21)
(PEP12 homolog) (AtPEP12) (aPEP12)
gi|11358870|pir||T51515 syntaxin homolog F5E19_170
[similarity] - Arabidopsis thaliana
gi|899122|gb|AAA87296.1| syntaxin of plants 21
[Arabidopsis thaliana] gi|9755735|emb|CAC01847.1|
syntaxin homologue [Arabidopsis thaliana]
gi|15724189|gb|AAL06486.1|AF411797_1 AT5g16830/F5E19_170
[Arabidopsis thaliana]
Length = 279
Score = 110 bits (275), Expect = 2e-23
Identities = 55/80 (68%), Positives = 69/80 (85%)
Frame = -1
Query: 663 EIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSS 484
EI+ QI +VN +FKDLA++V+ QG ++DDI SN++NSHAAT QA QL KA+KTQRSNSS
Sbjct: 198 EIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAATTQATVQLRKAAKTQRSNSS 257
Query: 483 LACLLLVIFGIVLLIVIIVL 424
L CLL++IFGIVLLIVIIV+
Sbjct: 258 LTCLLILIFGIVLLIVIIVV 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,773,354
Number of Sequences: 1393205
Number of extensions: 11368307
Number of successful extensions: 30176
Number of sequences better than 10.0: 221
Number of HSP's better than 10.0 without gapping: 28767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30154
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
