Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002350A_C01 KMC002350A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176113.1| disease resistance response protein-related/ di... 92 9e-19
ref|NP_187974.1| disease resistance response protein-related/ d... 80 3e-16
ref|NP_187976.1| disease resistance response protein-related/ di... 85 6e-16
gb|AAM91539.1| unknown protein [Arabidopsis thaliana] 79 6e-16
ref|NP_175917.1| disease resistance response protein-related/ d... 79 6e-16
>ref|NP_176113.1| disease resistance response protein-related/ dirigent
protein-related; protein id: At1g58170.1 [Arabidopsis
thaliana] gi|25347084|pir||A96615 probable dirigent
protein T18I24.8 [imported] - Arabidopsis thaliana
gi|12321259|gb|AAG50703.1|AC079604_10 hypothetical
protein [Arabidopsis thaliana]
gi|12321391|gb|AAG50769.1|AC079131_14 dirigent protein,
putative [Arabidopsis thaliana]
gi|26450861|dbj|BAC42538.1| unknown protein [Arabidopsis
thaliana] gi|28372910|gb|AAO39937.1| At1g58170
[Arabidopsis thaliana]
Length = 185
Score = 91.7 bits (226), Expect(2) = 9e-19
Identities = 43/78 (55%), Positives = 54/78 (69%)
Frame = -2
Query: 531 TSKLVGRAQGFYVSTSQTEYDFLMIQTFVLFEGVYNGSSITFLARNPINEKVRELPVVGG 352
+SK+VGRAQGFY TS+ E LM F + +G YNGS+IT L RN + +KVRE+PV+GG
Sbjct: 90 SSKMVGRAQGFYAGTSKEEIGLLMAMNFAILDGKYNGSTITVLGRNSVFDKVREMPVIGG 149
Query: 351 VGRFRFAKGYAAC*HHLF 298
G FRFA+GY H F
Sbjct: 150 SGLFRFARGYVQASTHEF 167
Score = 23.1 bits (48), Expect(2) = 9e-19
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 283 GDTTVEYNVYVSHY 242
G+ VEYN Y+ HY
Sbjct: 172 GNAIVEYNCYLLHY 185
>ref|NP_187974.1| disease resistance response protein-related/ dirigent
protein-related; protein id: At3g13650.1 [Arabidopsis
thaliana] gi|9294009|dbj|BAB01912.1| disease resistance
response protein-like [Arabidopsis thaliana]
gi|26451116|dbj|BAC42662.1| putative dirigent protein
[Arabidopsis thaliana]
Length = 186
Score = 79.7 bits (195), Expect(2) = 3e-16
Identities = 38/69 (55%), Positives = 46/69 (66%)
Frame = -2
Query: 528 SKLVGRAQGFYVSTSQTEYDFLMIQTFVLFEGVYNGSSITFLARNPINEKVRELPVVGGV 349
S LVG+AQG Y +T Q + LM+ F G YNGSSI L RN + KVRE+PV+GG
Sbjct: 92 STLVGQAQGIYAATGQRDASALMVMNFAFKTGKYNGSSIAILGRNAVLTKVREMPVIGGS 151
Query: 348 GRFRFAKGY 322
G FRFA+GY
Sbjct: 152 GLFRFARGY 160
Score = 26.6 bits (57), Expect(2) = 3e-16
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 283 GDTTVEYNVYVSHY 242
GD TVEY+ YV HY
Sbjct: 173 GDATVEYSCYVLHY 186
>ref|NP_187976.1| disease resistance response protein-related/ dirigent
protein-related; protein id: At3g13662.1 [Arabidopsis
thaliana] gi|9294010|dbj|BAB01913.1| contains similarity
to disease resistance response protein~gene_id:MMM17.6
[Arabidopsis thaliana]
Length = 186
Score = 84.7 bits (208), Expect = 6e-16
Identities = 40/71 (56%), Positives = 50/71 (70%)
Frame = -2
Query: 534 RTSKLVGRAQGFYVSTSQTEYDFLMIQTFVLFEGVYNGSSITFLARNPINEKVRELPVVG 355
R + +VG+AQG YV+ +Q E FLM+ F G YNGS+IT L RN + KVRE+PVVG
Sbjct: 89 RNATVVGQAQGMYVAAAQGEIGFLMVMNFAFTTGKYNGSTITILGRNVVMSKVREMPVVG 148
Query: 354 GVGRFRFAKGY 322
G G FRFA+GY
Sbjct: 149 GSGIFRFARGY 159
>gb|AAM91539.1| unknown protein [Arabidopsis thaliana]
Length = 187
Score = 78.6 bits (192), Expect(2) = 6e-16
Identities = 37/69 (53%), Positives = 46/69 (66%)
Frame = -2
Query: 528 SKLVGRAQGFYVSTSQTEYDFLMIQTFVLFEGVYNGSSITFLARNPINEKVRELPVVGGV 349
S ++G+AQGFY +Q E FLM F G YNGS+IT L RN +VRE+P+VGG
Sbjct: 93 STVLGQAQGFYAGAAQKELGFLMAMNFAFKTGKYNGSTITILGRNTALSEVREMPIVGGS 152
Query: 348 GRFRFAKGY 322
G FRFA+GY
Sbjct: 153 GLFRFARGY 161
Score = 26.6 bits (57), Expect(2) = 6e-16
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 283 GDTTVEYNVYVSHY 242
GD TVEY+ YV HY
Sbjct: 174 GDATVEYSCYVLHY 187
>ref|NP_175917.1| disease resistance response protein-related/ dirigent
protein-related; protein id: At1g55210.1 [Arabidopsis
thaliana] gi|25347080|pir||H96593 unknown protein,
79801-80364 [imported] - Arabidopsis thaliana
gi|12323161|gb|AAG51557.1|AC027034_3 unknown protein;
79801-80364 [Arabidopsis thaliana]
Length = 187
Score = 78.6 bits (192), Expect(2) = 6e-16
Identities = 37/69 (53%), Positives = 46/69 (66%)
Frame = -2
Query: 528 SKLVGRAQGFYVSTSQTEYDFLMIQTFVLFEGVYNGSSITFLARNPINEKVRELPVVGGV 349
S ++G+AQGFY +Q E FLM F G YNGS+IT L RN +VRE+P+VGG
Sbjct: 93 STVLGQAQGFYAGAAQKELGFLMAMNFAFKTGKYNGSTITILGRNTALSEVREMPIVGGS 152
Query: 348 GRFRFAKGY 322
G FRFA+GY
Sbjct: 153 GLFRFARGY 161
Score = 26.6 bits (57), Expect(2) = 6e-16
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 283 GDTTVEYNVYVSHY 242
GD TVEY+ YV HY
Sbjct: 174 GDATVEYSCYVLHY 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,220,875
Number of Sequences: 1393205
Number of extensions: 9951788
Number of successful extensions: 26797
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 25906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26744
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
