Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002349A_C01 KMC002349A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM53282.1| putative protein [Arabidopsis thaliana] gi|231976... 37 0.17
gb|AAO52645.1| similar to Homo sapiens (Human). HIWI [Dictyostel... 37 0.17
pir||A55035 cysteine-rich protein CRP1 - earthworm (Enchytraeus ... 37 0.22
gb|AAH47188.1| Similar to synovial sarcoma translocation, chromo... 35 0.65
ref|NP_195002.1| putative protein; protein id: At4g32760.1 [Arab... 35 0.65
>gb|AAM53282.1| putative protein [Arabidopsis thaliana] gi|23197650|gb|AAN15352.1|
putative protein [Arabidopsis thaliana]
Length = 675
Score = 37.0 bits (84), Expect = 0.17
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = -3
Query: 554 PQRGTYDSASQQRYAPPSPQFTQQQS--AGPAGLGERRNFVPQQG---FGQPGQGERRDL 390
P T S + + P +PQ QQ + AG AGL + F PQ G F QP G+
Sbjct: 378 PSPATAPSGNPAQNIPLNPQGHQQPNSQAGEAGLQQSNGFAPQVGYSQFEQPSYGQ---- 433
Query: 389 AARGVASEARGSTSTPPYLKDFKPSYMEQSQEDFKP 282
GV+S S+ P + +PSY Q F P
Sbjct: 434 ---GVSS----PWSSQPAQQPVQPSYGAQDSTAFPP 462
>gb|AAO52645.1| similar to Homo sapiens (Human). HIWI [Dictyostelium discoideum]
Length = 1208
Score = 37.0 bits (84), Expect = 0.17
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Frame = -3
Query: 563 NYPPQRGTYDSASQQRYAPPSPQFTQQQSAGPAGLGERRNFVPQQGFG-------QPGQG 405
+Y PQ+ ++D QQ+Y PP P QQQ +++ + PQQ G Q Q
Sbjct: 111 SYYPQQPSFDPYFQQQYQPPPPP-PQQQQQQYQPQSQQQQYQPQQSHGYDYQQSYQGYQN 169
Query: 404 ERRDLAARGVASEARGSTSTPPYLKDFKPSYMEQSQEDFKPSYMEEFE 261
+++ ++ S+ + S +P + + SY Q+ + + F+
Sbjct: 170 QQQPQQSQENQSQQQQSQQSPQPQRPQQQSYQSYQQQQPQQQQQDIFQ 217
>pir||A55035 cysteine-rich protein CRP1 - earthworm (Enchytraeus buchholzi)
gi|488803|emb|CAA55899.1| cysteine-rich-protein
[Enchytraeus buchholzi]
Length = 251
Score = 36.6 bits (83), Expect = 0.22
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 412 PGCPKPCCGTKFLLSPRPAGPAL-C----CCVNCGEG 507
PGC K CCGTK + P GP+ C C VNC +G
Sbjct: 119 PGCTKRCCGTKCGVEDCPCGPSCKCEKGDCKVNCSKG 155
>gb|AAH47188.1| Similar to synovial sarcoma translocation, chromosome 18 [Danio
rerio]
Length = 368
Score = 35.0 bits (79), Expect = 0.65
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Frame = -3
Query: 506 PSPQFTQQQSAGPA----GLGERRNFVPQQGFGQPGQGERRDLAARGVASEARGSTSTPP 339
P P Q + GP ++ N P G GQ QG++ + G + G PP
Sbjct: 184 PRPNMNMQPNQGPMMHQQAPSQQYNMPPSGGSGQHYQGQQNPMGMMGQGNHVMGQRPMPP 243
Query: 338 YLKDFK-PSYMEQSQEDFKPSYMEEFEKIGNG 246
Y + P Q+++ Y E++ G G
Sbjct: 244 YRPPHQGPPQQYPGQDEY---YTEQYSHGGQG 272
>ref|NP_195002.1| putative protein; protein id: At4g32760.1 [Arabidopsis thaliana]
gi|7486417|pir||T04449 hypothetical protein F4D11.40 -
Arabidopsis thaliana gi|3063694|emb|CAA18585.1| putative
protein [Arabidopsis thaliana]
gi|7270223|emb|CAB79993.1| putative protein [Arabidopsis
thaliana]
Length = 838
Score = 35.0 bits (79), Expect = 0.65
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Frame = -3
Query: 554 PQRGTYDSASQQRYAPPSPQFTQQQS--AGPAGLGERRNFVPQQGFGQ-----PGQGERR 396
P T S + + P +PQ QQ + AG AGL + F PQ G+ Q GQG
Sbjct: 540 PSPATAPSGNPAQNIPLNPQGHQQPNSQAGEAGLQQSNGFAPQVGYSQFEQPSYGQGVSS 599
Query: 395 DLAARGVASEARGSTSTPPYLKDFKPSYMEQSQEDFKPS 279
+++ + S F P E +D+ PS
Sbjct: 600 PWSSQPAQQPVQPSYEGAQDSTAFPPPPWEAQLQDYSPS 638
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,378,849
Number of Sequences: 1393205
Number of extensions: 12465878
Number of successful extensions: 38322
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 35712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38100
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
