Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002348A_C03 KMC002348A_c03
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_044669.1| Virion glycoprotein I [Human herpesvirus 1] gi|... 44 0.002
ref|NP_508603.1| Putative membrane protein, with at least 2 tran... 42 0.005
pir||T29634 hypothetical protein C12D12.1 - Caenorhabditis elegans 42 0.005
gb|AAG59609.1| pectate lyase A [Clostridium cellulovorans] 42 0.007
pir||T06662 hypothetical protein T6G15.150 - Arabidopsis thalian... 42 0.007
>ref|NP_044669.1| Virion glycoprotein I [Human herpesvirus 1]
gi|138326|sp|P06487|VGLI_HSV11 GLYCOPROTEIN I
gi|73721|pir||QQBE77 glycoprotein I precursor - human
herpesvirus 1 (strain 17) gi|59565|emb|CAA32284.1|
Virion glycoprotein I [Human herpesvirus 1]
gi|59879|emb|CAA26061.1| 41K (Us7) (aa 1-390) [Human
herpesvirus 1] gi|291497|gb|AAA96681.1| 41 kDa protein
[human herpesvirus 1]
Length = 390
Score = 43.5 bits (101), Expect = 0.002
Identities = 21/34 (61%), Positives = 22/34 (63%)
Frame = -3
Query: 617 PSSTGTPSTTTGTPSTTIGIPSTTTGTTPYSTTP 516
P+ TPSTTT TPSTTI PSTT STTP
Sbjct: 204 PNQASTPSTTTSTPSTTIPAPSTTIPAPQASTTP 237
Score = 36.2 bits (82), Expect = 0.37
Identities = 20/39 (51%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Frame = -3
Query: 635 PSLGTTPSST-GTPSTTTGTPSTTIGIPSTTTGTTPYST 522
P+ +TPS+T TPSTT PSTT IP+ TTP+ T
Sbjct: 204 PNQASTPSTTTSTPSTTIPAPSTT--IPAPQASTTPFPT 240
>ref|NP_508603.1| Putative membrane protein, with at least 2 transmembrane domains,
nematode specific (81.0 kD) [Caenorhabditis elegans]
gi|14573793|gb|AAA96080.2| Hypothetical protein
C12D12.1a [Caenorhabditis elegans]
Length = 769
Score = 42.4 bits (98), Expect = 0.005
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = -3
Query: 635 PSLGTT----PSSTGTPSTTTGTPSTTIGIPSTTTGTTPYSTTP 516
PS GTT P++TG+P+T T P T +PS+TT T P TTP
Sbjct: 517 PSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPSSTTQTAPPVTTP 560
Score = 35.8 bits (81), Expect = 0.49
Identities = 19/39 (48%), Positives = 24/39 (60%), Gaps = 2/39 (5%)
Frame = -3
Query: 617 PSSTGTPSTTTGTPSTTIGIPSTT--TGTTPYSTTPGVL 507
P +T TP+TTT T +TT +TT T TTP TTP +
Sbjct: 680 PVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTI 718
Score = 34.3 bits (77), Expect = 1.4
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 635 PSLGTTPSST-GTPSTTTGTPSTTIGIPSTTTGTTPYSTTP 516
P TTP++T T +TTT T +TT P+T TTP + TP
Sbjct: 680 PVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITP 720
Score = 33.1 bits (74), Expect = 3.2
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -3
Query: 623 TTPSSTGTPSTTTGT--PSTTIGIPS------TTTGTTPYSTTPGVLGGIGTGMGPSGT 471
TTP T P TT T P TT+ +P+ TTT T P + T +GT +GT
Sbjct: 463 TTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGT 521
Score = 32.3 bits (72), Expect = 5.4
Identities = 15/35 (42%), Positives = 23/35 (64%)
Frame = -3
Query: 620 TPSSTGTPSTTTGTPSTTIGIPSTTTGTTPYSTTP 516
TP++ GT + +TGT TT+ +P+TT T +T P
Sbjct: 508 TPTTVGTMTPSTGT--TTVPVPTTTGSPTTQTTAP 540
Score = 31.6 bits (70), Expect = 9.2
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -3
Query: 617 PSSTGTP--STTTGTPSTTIGI--PSTTTGTTPYSTTPG 513
P++T TP + TT TP TT+G PST T T P TT G
Sbjct: 494 PTTTNTPPANPTTATP-TTVGTMTPSTGTTTVPVPTTTG 531
>pir||T29634 hypothetical protein C12D12.1 - Caenorhabditis elegans
Length = 825
Score = 42.4 bits (98), Expect = 0.005
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = -3
Query: 635 PSLGTT----PSSTGTPSTTTGTPSTTIGIPSTTTGTTPYSTTP 516
PS GTT P++TG+P+T T P T +PS+TT T P TTP
Sbjct: 573 PSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPSSTTQTAPPVTTP 616
Score = 35.8 bits (81), Expect = 0.49
Identities = 19/39 (48%), Positives = 24/39 (60%), Gaps = 2/39 (5%)
Frame = -3
Query: 617 PSSTGTPSTTTGTPSTTIGIPSTT--TGTTPYSTTPGVL 507
P +T TP+TTT T +TT +TT T TTP TTP +
Sbjct: 736 PVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTI 774
Score = 34.3 bits (77), Expect = 1.4
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 635 PSLGTTPSST-GTPSTTTGTPSTTIGIPSTTTGTTPYSTTP 516
P TTP++T T +TTT T +TT P+T TTP + TP
Sbjct: 736 PVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITP 776
>gb|AAG59609.1| pectate lyase A [Clostridium cellulovorans]
Length = 914
Score = 42.0 bits (97), Expect = 0.007
Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 635 PSLGTTPSSTGTPSTTTGTPSTTIGIPSTTTGTTPYSTTPGV-LGGIGTGMGPSGTGIDD 459
P GTT TGT TT GT +TT G +TT GT +TTPG GTG TG
Sbjct: 334 PGTGTTTPGTGT--TTPGTGTTTPGTGTTTPGTG--TTTPGTGTTTPGTGTTTPSTGTTG 389
Query: 458 SHG 450
+HG
Sbjct: 390 THG 392
Score = 39.3 bits (90), Expect = 0.044
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = -3
Query: 635 PSLGTTPSSTGTPSTTTGTPSTTIGIPSTTTGTTPYSTTPGVLGGIGTGMG 483
P GTT TGT TT GT +TT G +TT GT + + G G GT G
Sbjct: 348 PGTGTTTPGTGT--TTPGTGTTTPGTGTTTPGTGTTTPSTGTTGTHGTSTG 396
Score = 32.3 bits (72), Expect = 5.4
Identities = 25/74 (33%), Positives = 36/74 (47%), Gaps = 2/74 (2%)
Frame = -3
Query: 635 PSLGTTPSSTGTPSTTTGTPSTTIGIPSTTTGTTPYSTTP--GVLGGIGTGMGPSGTGID 462
P+ TTP++ TP+T T TP+T + TT TTP +T V I G + T ++
Sbjct: 149 PTTPTTPTTPTTPTTPT-TPTTPTTPTTPTTPTTPSTTVQKLNVTSDIAAGSYTTSTTVN 207
Query: 461 DSHGGLRLLDIALF 420
G LL A +
Sbjct: 208 ----GFTLLGSATY 217
>pir||T06662 hypothetical protein T6G15.150 - Arabidopsis thaliana
gi|4678386|emb|CAB41118.1| putative protein [Arabidopsis
thaliana] gi|7268063|emb|CAB78402.1| putative protein
[Arabidopsis thaliana]
Length = 256
Score = 42.0 bits (97), Expect = 0.007
Identities = 33/88 (37%), Positives = 38/88 (42%), Gaps = 3/88 (3%)
Frame = -3
Query: 626 GTTPSSTGTPSTTTGTPSTTIGIPSTTTGTTPYSTTPGVLGGIGTGMGPSGTGI---DDS 456
GT + + +T GTPSTT+G TT P TT G G G+ P GT D
Sbjct: 173 GTNAGGSASTTTVGGTPSTTVGNSPMTTLRPPSGTTTSPFGIGGGGLNPQGTTTTTNTDE 232
Query: 455 HGGLRLLDIALFSPFSITLFYGLIMLLW 372
G I S SI LF L LLW
Sbjct: 233 SGSY----IINKSTVSIALFVAL--LLW 254
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,339,630
Number of Sequences: 1393205
Number of extensions: 14483844
Number of successful extensions: 92268
Number of sequences better than 10.0: 757
Number of HSP's better than 10.0 without gapping: 56826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83698
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
