Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002347A_C01 KMC002347A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190808.1| syntaxin SYP122; protein id: At3g52400.1, suppo... 84 8e-16
pir||T48847 syntaxin synt4 [imported] - Arabidopsis thaliana gi|... 84 8e-16
ref|NP_187788.1| syntaxin SYP121; protein id: At3g11820.1, suppo... 69 4e-11
gb|AAD11808.1| syntaxin-related protein Nt-syr1 [Nicotiana tabacum] 55 5e-07
dbj|BAC07416.1| P0039H02.3 [Oryza sativa (japonica cultivar-group)] 48 9e-05
>ref|NP_190808.1| syntaxin SYP122; protein id: At3g52400.1, supported by cDNA:
37248., supported by cDNA: gi_15292946, supported by
cDNA: gi_20259662 [Arabidopsis thaliana]
gi|28380140|sp|Q9SVC2|S122_ARATH Syntaxin 122 (AtSYP122)
(Synt4) gi|7486007|pir||T08459 hypothetical protein
F22O6.220 - Arabidopsis thaliana
gi|4886287|emb|CAB43444.1| syntaxin-like protein synt4
[Arabidopsis thaliana] gi|15292947|gb|AAK93584.1|
putative syntaxin protein synt4 [Arabidopsis thaliana]
gi|20259663|gb|AAM14349.1| putative syntaxin synt4
protein [Arabidopsis thaliana]
gi|24417512|gb|AAN60366.1| unknown [Arabidopsis
thaliana]
Length = 341
Score = 84.3 bits (207), Expect = 8e-16
Identities = 35/56 (62%), Positives = 42/56 (74%)
Frame = -1
Query: 545 HQKNTRKWTCFCILLLLVIILVVVLVTVKPWESNGSGGNNGGSQPAPAQTTPSPPP 378
+QKNTRKWTCF ILLLL+I++++V+ TVKPWESNG GG Q P Q P PPP
Sbjct: 278 YQKNTRKWTCFAILLLLIIVVLIVVFTVKPWESNGGGGGGAPRQATPVQAQPPPPP 333
>pir||T48847 syntaxin synt4 [imported] - Arabidopsis thaliana
gi|5701797|emb|CAB52174.1| syntaxin protein [Arabidopsis
thaliana] gi|21593223|gb|AAM65172.1| syntaxin-like
protein synt4 [Arabidopsis thaliana]
Length = 341
Score = 84.3 bits (207), Expect = 8e-16
Identities = 35/56 (62%), Positives = 42/56 (74%)
Frame = -1
Query: 545 HQKNTRKWTCFCILLLLVIILVVVLVTVKPWESNGSGGNNGGSQPAPAQTTPSPPP 378
+QKNTRKWTCF ILLLL+I++++V+ TVKPWESNG GG Q P Q P PPP
Sbjct: 278 YQKNTRKWTCFAILLLLIIVVLIVVFTVKPWESNGGGGGGAPRQATPVQAQPPPPP 333
>ref|NP_187788.1| syntaxin SYP121; protein id: At3g11820.1, supported by cDNA:
38899., supported by cDNA: gi_20260503, supported by
cDNA: gi_4206788 [Arabidopsis thaliana]
gi|28380149|sp|Q9ZSD4|S121_ARATH Syntaxin 121 (AtSYP121)
(Syntaxin-related protein At-Syr1)
gi|4206789|gb|AAD11809.1| syntaxin-related protein
At-SYR1 [Arabidopsis thaliana]
gi|6671938|gb|AAF23198.1|AC016795_11 putative syntaxin
[Arabidopsis thaliana] gi|20260504|gb|AAM13150.1|
putative syntaxin [Arabidopsis thaliana]
gi|21593428|gb|AAM65395.1| putative syntaxin
[Arabidopsis thaliana] gi|28059412|gb|AAO30056.1|
putative syntaxin [Arabidopsis thaliana]
Length = 346
Score = 68.9 bits (167), Expect = 4e-11
Identities = 33/67 (49%), Positives = 43/67 (63%), Gaps = 7/67 (10%)
Frame = -1
Query: 545 HQKNTRKWTCFCILLLLVIILVVVLVTVKPWESN-------GSGGNNGGSQPAPAQTTPS 387
+QKNTRKWTC I++L++II VVVL +KPW ++ G GG GGSQP + +
Sbjct: 279 YQKNTRKWTCIAIIILIIIITVVVLAVLKPWNNSSGGGGGGGGGGTTGGSQP----NSGT 334
Query: 386 PPPPPSA 366
PP PP A
Sbjct: 335 PPNPPQA 341
>gb|AAD11808.1| syntaxin-related protein Nt-syr1 [Nicotiana tabacum]
Length = 300
Score = 55.1 bits (131), Expect = 5e-07
Identities = 24/32 (75%), Positives = 30/32 (93%)
Frame = -1
Query: 545 HQKNTRKWTCFCILLLLVIILVVVLVTVKPWE 450
HQKNTRKWTCF I+LLL+IILVVVL +++PW+
Sbjct: 269 HQKNTRKWTCFAIILLLIIILVVVL-SIQPWK 299
>dbj|BAC07416.1| P0039H02.3 [Oryza sativa (japonica cultivar-group)]
Length = 320
Score = 47.8 bits (112), Expect = 9e-05
Identities = 15/31 (48%), Positives = 27/31 (86%)
Frame = -1
Query: 542 QKNTRKWTCFCILLLLVIILVVVLVTVKPWE 450
QKN+RKW C+ I+LLL+I++++V+ ++PW+
Sbjct: 287 QKNSRKWMCYAIILLLIIVVIIVVAVIQPWK 317
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,841,364
Number of Sequences: 1393205
Number of extensions: 12113194
Number of successful extensions: 91412
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 55779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82696
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
