Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002343A_C02 KMC002343A_c02
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T10672 aspartate-tRNA ligase homolog F6E21.100 - Arabidopsi... 120 1e-39
ref|NP_194847.2| aspartate--tRNA ligase - like protein; protein ... 120 1e-39
ref|NP_194417.2| putative aspartate-tRNA ligase; protein id: At4... 111 4e-35
pir||T04810 aspartate-tRNA ligase homolog F10M23.210 - Arabidops... 111 4e-35
ref|NP_476609.1| Aspartyl-tRNA synthetase CG3821-PA gi|7303387|g... 100 1e-32
>pir||T10672 aspartate-tRNA ligase homolog F6E21.100 - Arabidopsis thaliana
gi|7270020|emb|CAB79836.1| aspartate--tRNA ligase-like
protein [Arabidopsis thaliana]
Length = 558
Score = 120 bits (301), Expect(2) = 1e-39
Identities = 54/68 (79%), Positives = 60/68 (87%)
Frame = -3
Query: 638 RPFYTMPCYDNPAYTNSFDVFIRGEEIISGAQRIHVPDFLEERAAACGIEVSTISTYIDS 459
RPFYTM C DNP Y+NSFDVFIRGEEIISGAQR+H+P+ LE+RA CGI+V TISTYIDS
Sbjct: 456 RPFYTMTCADNPLYSNSFDVFIRGEEIISGAQRVHIPEVLEQRAGECGIDVKTISTYIDS 515
Query: 458 FRYGAPPH 435
FRYGAP H
Sbjct: 516 FRYGAPLH 523
Score = 64.7 bits (156), Expect(2) = 1e-39
Identities = 28/34 (82%), Positives = 33/34 (96%)
Frame = -2
Query: 429 GFGVGLERVVMLFCGLDNIRKTSLYPRDPKRIAP 328
GFGVGLERVVMLFC L+NIRKTSL+PRDP+R++P
Sbjct: 525 GFGVGLERVVMLFCALNNIRKTSLFPRDPQRLSP 558
>ref|NP_194847.2| aspartate--tRNA ligase - like protein; protein id: At4g31180.1,
supported by cDNA: gi_18252210 [Arabidopsis thaliana]
gi|18252211|gb|AAL61938.1| aspartate--tRNA ligase - like
protein [Arabidopsis thaliana]
gi|27311923|gb|AAO00927.1| aspartate--tRNA ligase - like
protein [Arabidopsis thaliana]
Length = 405
Score = 120 bits (301), Expect(2) = 1e-39
Identities = 54/68 (79%), Positives = 60/68 (87%)
Frame = -3
Query: 638 RPFYTMPCYDNPAYTNSFDVFIRGEEIISGAQRIHVPDFLEERAAACGIEVSTISTYIDS 459
RPFYTM C DNP Y+NSFDVFIRGEEIISGAQR+H+P+ LE+RA CGI+V TISTYIDS
Sbjct: 303 RPFYTMTCADNPLYSNSFDVFIRGEEIISGAQRVHIPEVLEQRAGECGIDVKTISTYIDS 362
Query: 458 FRYGAPPH 435
FRYGAP H
Sbjct: 363 FRYGAPLH 370
Score = 64.7 bits (156), Expect(2) = 1e-39
Identities = 28/34 (82%), Positives = 33/34 (96%)
Frame = -2
Query: 429 GFGVGLERVVMLFCGLDNIRKTSLYPRDPKRIAP 328
GFGVGLERVVMLFC L+NIRKTSL+PRDP+R++P
Sbjct: 372 GFGVGLERVVMLFCALNNIRKTSLFPRDPQRLSP 405
>ref|NP_194417.2| putative aspartate-tRNA ligase; protein id: At4g26870.1, supported
by cDNA: gi_17380669 [Arabidopsis thaliana]
gi|24030349|gb|AAN41339.1| putative aspartate-tRNA
ligase [Arabidopsis thaliana]
Length = 532
Score = 111 bits (277), Expect(2) = 4e-35
Identities = 51/68 (75%), Positives = 59/68 (86%)
Frame = -3
Query: 638 RPFYTMPCYDNPAYTNSFDVFIRGEEIISGAQRIHVPDFLEERAAACGIEVSTISTYIDS 459
RPFYTMP ++ Y+NSFDVFIRGEEI+SGAQRIH P+ LE+RA CGI+V TISTYID+
Sbjct: 430 RPFYTMPYENDSNYSNSFDVFIRGEEIMSGAQRIHDPELLEKRARECGIDVKTISTYIDA 489
Query: 458 FRYGAPPH 435
FRYGAPPH
Sbjct: 490 FRYGAPPH 497
Score = 58.9 bits (141), Expect(2) = 4e-35
Identities = 26/34 (76%), Positives = 30/34 (87%)
Frame = -2
Query: 429 GFGVGLERVVMLFCGLDNIRKTSLYPRDPKRIAP 328
GFGVGLERVVML C L+NIRKTSL+PRD +R+ P
Sbjct: 499 GFGVGLERVVMLLCALNNIRKTSLFPRDSQRLTP 532
>pir||T04810 aspartate-tRNA ligase homolog F10M23.210 - Arabidopsis thaliana
gi|4455210|emb|CAB36533.1| putative aspartate-tRNA
ligase [Arabidopsis thaliana] gi|7269540|emb|CAB79542.1|
putative aspartate-tRNA ligase [Arabidopsis thaliana]
Length = 504
Score = 111 bits (277), Expect(2) = 4e-35
Identities = 51/68 (75%), Positives = 59/68 (86%)
Frame = -3
Query: 638 RPFYTMPCYDNPAYTNSFDVFIRGEEIISGAQRIHVPDFLEERAAACGIEVSTISTYIDS 459
RPFYTMP ++ Y+NSFDVFIRGEEI+SGAQRIH P+ LE+RA CGI+V TISTYID+
Sbjct: 402 RPFYTMPYENDSNYSNSFDVFIRGEEIMSGAQRIHDPELLEKRARECGIDVKTISTYIDA 461
Query: 458 FRYGAPPH 435
FRYGAPPH
Sbjct: 462 FRYGAPPH 469
Score = 58.9 bits (141), Expect(2) = 4e-35
Identities = 26/34 (76%), Positives = 30/34 (87%)
Frame = -2
Query: 429 GFGVGLERVVMLFCGLDNIRKTSLYPRDPKRIAP 328
GFGVGLERVVML C L+NIRKTSL+PRD +R+ P
Sbjct: 471 GFGVGLERVVMLLCALNNIRKTSLFPRDSQRLTP 504
>ref|NP_476609.1| Aspartyl-tRNA synthetase CG3821-PA gi|7303387|gb|AAF58445.1|
CG3821-PA [Drosophila melanogaster]
gi|17944217|gb|AAL48003.1| GM14334p [Drosophila
melanogaster]
Length = 531
Score = 100 bits (249), Expect(2) = 1e-32
Identities = 45/68 (66%), Positives = 56/68 (82%)
Frame = -3
Query: 638 RPFYTMPCYDNPAYTNSFDVFIRGEEIISGAQRIHVPDFLEERAAACGIEVSTISTYIDS 459
RPFYTMP +NP Y+NS+D+F+RGEEI+SGAQRIH P++L ERA GI+ S I+ YI+S
Sbjct: 429 RPFYTMPDPNNPVYSNSYDMFMRGEEILSGAQRIHDPEYLIERAKHHGIDTSKIAAYIES 488
Query: 458 FRYGAPPH 435
FRYG PPH
Sbjct: 489 FRYGCPPH 496
Score = 61.2 bits (147), Expect(2) = 1e-32
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = -2
Query: 432 AGFGVGLERVVMLFCGLDNIRKTSLYPRDPKRIAP 328
AG G+G+ERVVML+ GLDNIRKTS++PRDPKR+ P
Sbjct: 497 AGGGIGMERVVMLYLGLDNIRKTSMFPRDPKRLTP 531
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,995,713
Number of Sequences: 1393205
Number of extensions: 12410186
Number of successful extensions: 31446
Number of sequences better than 10.0: 380
Number of HSP's better than 10.0 without gapping: 30029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31372
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
