Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002342A_C01 KMC002342A_c01
(731 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196415.1| unknown protein; protein id: At5g07980.1 [Arabi... 57 3e-07
ref|NP_196414.1| unknown protein; protein id: At5g07970.1 [Arabi... 56 5e-07
ref|NP_196411.1| unknown protein; protein id: At5g07940.1 [Arabi... 52 7e-06
pir||T45619 hypothetical protein F13G24.140 - Arabidopsis thalia... 43 0.005
ref|NP_683606.1| hypothetical protein; protein id: At3g29385.1 [... 39 0.058
>ref|NP_196415.1| unknown protein; protein id: At5g07980.1 [Arabidopsis thaliana]
gi|11357396|pir||T45623 hypothetical protein F13G24.180 -
Arabidopsis thaliana gi|6562312|emb|CAB62610.1| putative
protein [Arabidopsis thaliana]
gi|10176732|dbj|BAB09962.1| gene_id:MXM12.22~unknown
protein [Arabidopsis thaliana]
Length = 1501
Score = 57.0 bits (136), Expect = 3e-07
Identities = 33/79 (41%), Positives = 47/79 (58%), Gaps = 1/79 (1%)
Frame = -3
Query: 726 RLDSRASILDLRVECQDLERFSVIHRTCKVPWTGTE*WGGDLIIL*CQVANTQTL-PMPY 550
RL++ +I DLRVE QDLE+F+VI+R K + + N+ + P Y
Sbjct: 1434 RLENGTTIPDLRVEVQDLEKFAVINRFAKFHPPSMD-----------RTLNSVRINPQRY 1482
Query: 549 VTAVPLPRNLPDRVRCLSL 493
VT P+P+N+PDRV+CLSL
Sbjct: 1483 VTVAPMPQNIPDRVQCLSL 1501
>ref|NP_196414.1| unknown protein; protein id: At5g07970.1 [Arabidopsis thaliana]
gi|11357395|pir||T45622 hypothetical protein F13G24.170 -
Arabidopsis thaliana gi|6562311|emb|CAB62609.1| putative
protein [Arabidopsis thaliana]
gi|10176731|dbj|BAB09961.1| gene_id:MXM12.21~unknown
protein [Arabidopsis thaliana]
Length = 1097
Score = 56.2 bits (134), Expect = 5e-07
Identities = 31/76 (40%), Positives = 45/76 (58%)
Frame = -3
Query: 723 LDSRASILDLRVECQDLERFSVIHRTCKVPWTGTE*WGGDLIIL*CQVANTQTLPMPYVT 544
L+ +I DLRVE QDLERF+VI+R + + + V++ + P YVT
Sbjct: 1029 LEKGTTITDLRVEVQDLERFAVINRFASFHQSSSS--------MDRSVSSLRLNPQRYVT 1080
Query: 543 AVPLPRNLPDRVRCLS 496
P+PR++PDRV+CLS
Sbjct: 1081 VAPVPRHIPDRVQCLS 1096
>ref|NP_196411.1| unknown protein; protein id: At5g07940.1 [Arabidopsis thaliana]
gi|10176728|dbj|BAB09958.1| gene_id:MXM12.18~unknown
protein [Arabidopsis thaliana]
Length = 1526
Score = 52.4 bits (124), Expect = 7e-06
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = -3
Query: 723 LDSRASILDLRVECQDLERFSVIHRTCKV--PWTGTE*WGGDLIIL*CQVANTQTLPMP- 553
L++ +I DLRVE QDLE+F+VI+R K P + + N+ L +
Sbjct: 1458 LENGTTIPDLRVEVQDLEKFAVINRFAKFHPPSSSMN-----------RTVNSLKLNLQR 1506
Query: 552 YVTAVPLPRNLPDRVRCLSL 493
YVT P+P+N+PDRV+CLSL
Sbjct: 1507 YVTIAPMPQNIPDRVQCLSL 1526
>pir||T45619 hypothetical protein F13G24.140 - Arabidopsis thaliana
gi|6562308|emb|CAB62606.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1540
Score = 42.7 bits (99), Expect = 0.005
Identities = 28/75 (37%), Positives = 42/75 (55%), Gaps = 3/75 (4%)
Frame = -3
Query: 723 LDSRASILDLRVECQDLERFSVIHRTCKV--PWTGTE*WGGDLIIL*CQVANTQTLPMP- 553
L++ +I DLRVE QDLE+F+VI+R K P + + N+ L +
Sbjct: 1454 LENGTTIPDLRVEVQDLEKFAVINRFAKFHPPSSSMN-----------RTVNSLKLNLQR 1502
Query: 552 YVTAVPLPRNLPDRV 508
YVT P+P+N+PDR+
Sbjct: 1503 YVTIAPMPQNIPDRL 1517
>ref|NP_683606.1| hypothetical protein; protein id: At3g29385.1 [Arabidopsis
thaliana]
Length = 218
Score = 39.3 bits (90), Expect = 0.058
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -3
Query: 723 LDSRASILDLRVECQDLERFSVIHRTCKVPWTGTE*WGGDLIIL*CQVANT--QTLPMPY 550
L+ SILD+ E QDLERFS+I+ K A T + +P Y
Sbjct: 156 LERTTSILDIIFEIQDLERFSMINHLGKFH----------------NRAKTFKRLIPHKY 199
Query: 549 VTAVPLPRNLPDRVRCLSL 493
A+ +P NLP+ + CL L
Sbjct: 200 AVAIQMPMNLPEPLHCLPL 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 653,215,561
Number of Sequences: 1393205
Number of extensions: 14518725
Number of successful extensions: 38664
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38638
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
