Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002338A_C01 KMC002338A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564751.1| expressed protein; protein id: At1g59710.1, sup... 82 5e-15
gb|AAO72366.1| hypothetical protein [Oryza sativa (japonica cult... 78 1e-13
gb|AAF79761.1|AC009317_20 T30E16.31 [Arabidopsis thaliana] 77 1e-13
dbj|BAB02179.1| gb|AAD39313.1~gene_id:MZN14.10~similar to unknow... 76 4e-13
ref|NP_189504.1| hypothetical protein; protein id: At3g28630.1 [... 76 4e-13
>ref|NP_564751.1| expressed protein; protein id: At1g59710.1, supported by cDNA:
10295., supported by cDNA: gi_15010641 [Arabidopsis
thaliana] gi|25372849|pir||G96620 hypothetical protein
F23H11.2 [imported] - Arabidopsis thaliana
gi|5080804|gb|AAD39313.1|AC007258_2 Hypothetical protein
[Arabidopsis thaliana] gi|15010642|gb|AAK73980.1|
At1g59710/T30E16_31 [Arabidopsis thaliana]
gi|22137290|gb|AAM91490.1| At1g59710/T30E16_31
[Arabidopsis thaliana]
Length = 300
Score = 82.0 bits (201), Expect = 5e-15
Identities = 40/61 (65%), Positives = 47/61 (76%)
Frame = -3
Query: 603 GNGVEELKRKFEEETGLEGVIVCNRSPLSGKLYPLRLQLPPNNVTMHVVLVLPFSKVARD 424
GNGVEEL + +EE+ +E VIVC RSPL+GKL+PLRLQLPPNN M VVLV SK+A
Sbjct: 238 GNGVEELTMRLKEESNVEDVIVCTRSPLNGKLFPLRLQLPPNNADMTVVLVPKSSKIAEK 297
Query: 423 F 421
F
Sbjct: 298 F 298
>gb|AAO72366.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 388
Score = 77.8 bits (190), Expect = 1e-13
Identities = 35/56 (62%), Positives = 43/56 (76%)
Frame = -3
Query: 603 GNGVEELKRKFEEETGLEGVIVCNRSPLSGKLYPLRLQLPPNNVTMHVVLVLPFSK 436
G+ +EEL K +EETGL +I+C RSP++GKL PLRLQLPPNN MH+VLV SK
Sbjct: 291 GSNLEELTHKLQEETGLHDIIICTRSPITGKLAPLRLQLPPNNAAMHIVLVQESSK 346
>gb|AAF79761.1|AC009317_20 T30E16.31 [Arabidopsis thaliana]
Length = 326
Score = 77.4 bits (189), Expect = 1e-13
Identities = 38/56 (67%), Positives = 44/56 (77%)
Frame = -3
Query: 603 GNGVEELKRKFEEETGLEGVIVCNRSPLSGKLYPLRLQLPPNNVTMHVVLVLPFSK 436
GNGVEEL + +EE+ +E VIVC RSPL+GKL+PLRLQLPPNN M VVLV SK
Sbjct: 238 GNGVEELTMRLKEESNVEDVIVCTRSPLNGKLFPLRLQLPPNNADMTVVLVPKSSK 293
>dbj|BAB02179.1| gb|AAD39313.1~gene_id:MZN14.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 316
Score = 75.9 bits (185), Expect = 4e-13
Identities = 35/56 (62%), Positives = 43/56 (76%)
Frame = -3
Query: 603 GNGVEELKRKFEEETGLEGVIVCNRSPLSGKLYPLRLQLPPNNVTMHVVLVLPFSK 436
G G+EELK K EETGL + +C+++PL+GKLYPLRL LPPNN MHVVL+ SK
Sbjct: 260 GMGLEELKEKLIEETGLSDISICSKNPLNGKLYPLRLHLPPNNTKMHVVLIPSPSK 315
>ref|NP_189504.1| hypothetical protein; protein id: At3g28630.1 [Arabidopsis
thaliana]
Length = 297
Score = 75.9 bits (185), Expect = 4e-13
Identities = 35/56 (62%), Positives = 43/56 (76%)
Frame = -3
Query: 603 GNGVEELKRKFEEETGLEGVIVCNRSPLSGKLYPLRLQLPPNNVTMHVVLVLPFSK 436
G G+EELK K EETGL + +C+++PL+GKLYPLRL LPPNN MHVVL+ SK
Sbjct: 241 GMGLEELKEKLIEETGLSDISICSKNPLNGKLYPLRLHLPPNNTKMHVVLIPSPSK 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,060,710
Number of Sequences: 1393205
Number of extensions: 10926587
Number of successful extensions: 23957
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23955
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
