Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002336A_C01 KMC002336A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF07191.1|AF193845_1 branched-chain amino acid aminotransfer... 167 1e-40
gb|AAF07192.1|AF193846_1 branched-chain amino acid aminotransfer... 164 9e-40
gb|AAK43507.1|AC020666_17 putative aminotransferase [Oryza sativ... 164 1e-39
gb|AAM65160.1| branched-chain-amino-acid transaminase-like prote... 160 1e-38
ref|NP_566923.1| branched-chain-amino-acid transaminase -like pr... 160 1e-38
>gb|AAF07191.1|AF193845_1 branched-chain amino acid aminotransferase [Solanum tuberosum]
Length = 418
Score = 167 bits (422), Expect = 1e-40
Identities = 86/107 (80%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
Frame = -1
Query: 632 NVISTPAVKGTILPGITRKSIIDVGRSQGFQVEERLVSVDELLDADEVFCTGTAVVVSPV 453
N+I+TPA+KGTILPGITRKSIIDV SQGFQVEER VSVDELLDADEVFCTGTAVVVSPV
Sbjct: 312 NLIATPAIKGTILPGITRKSIIDVALSQGFQVEERQVSVDELLDADEVFCTGTAVVVSPV 371
Query: 452 GSVTYLGDRVSY-RDGVGAVSQPLYTALTRLQMGLAEDEMNWTVELR 315
GS+T+LG RVSY DGVG VS+ LY+ LT LQMGLA D MNWTV L+
Sbjct: 372 GSITHLGKRVSYGSDGVGRVSKQLYSTLTSLQMGLATDNMNWTVALK 418
>gb|AAF07192.1|AF193846_1 branched-chain amino acid aminotransferase [Solanum tuberosum]
Length = 377
Score = 164 bits (415), Expect = 9e-40
Identities = 85/107 (79%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
Frame = -1
Query: 632 NVISTPAVKGTILPGITRKSIIDVGRSQGFQVEERLVSVDELLDADEVFCTGTAVVVSPV 453
N+I TPA+KGTILPGITRKSIIDV SQGFQVEER VSVDELLDADEVFCTGTAVVVSPV
Sbjct: 271 NLIVTPAIKGTILPGITRKSIIDVAISQGFQVEERQVSVDELLDADEVFCTGTAVVVSPV 330
Query: 452 GSVTYLGDRVSY-RDGVGAVSQPLYTALTRLQMGLAEDEMNWTVELR 315
GS+T+ G RV+Y DGVG VSQ LY+ALT LQMGL+ED+M W VEL+
Sbjct: 331 GSITHQGRRVTYGNDGVGLVSQQLYSALTSLQMGLSEDKMGWIVELK 377
>gb|AAK43507.1|AC020666_17 putative aminotransferase [Oryza sativa (japonica cultivar-group)]
Length = 381
Score = 164 bits (414), Expect = 1e-39
Identities = 86/107 (80%), Positives = 92/107 (85%), Gaps = 2/107 (1%)
Frame = -1
Query: 632 NVISTPAVKGTILPGITRKSIIDVGRSQGFQVEERLVSVDELLDADEVFCTGTAVVVSPV 453
NVISTPAVKGTILPGITRKSIIDV S+GFQVEERLVSVDELL+ADEVFCTGTAVVVSPV
Sbjct: 274 NVISTPAVKGTILPGITRKSIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVSPV 333
Query: 452 GSVTYLGDRVSY--RDGVGAVSQPLYTALTRLQMGLAEDEMNWTVEL 318
GS+TY G RV Y GVG VSQ LYT+LT LQMG AED + WTV+L
Sbjct: 334 GSITYQGKRVEYAGNKGVGVVSQQLYTSLTSLQMGQAEDWLGWTVQL 380
>gb|AAM65160.1| branched-chain-amino-acid transaminase-like protein [Arabidopsis
thaliana]
Length = 413
Score = 160 bits (406), Expect = 1e-38
Identities = 83/106 (78%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Frame = -1
Query: 632 NVISTPAVKGTILPGITRKSIIDVGRSQGFQVEERLVSVDELLDADEVFCTGTAVVVSPV 453
NVISTP +KGTILPGITRKS+IDV R+QGFQVEER V+VDELL+ADEVFCTGTAVVVSPV
Sbjct: 307 NVISTPEIKGTILPGITRKSMIDVARTQGFQVEERNVTVDELLEADEVFCTGTAVVVSPV 366
Query: 452 GSVTYLGDRVSYRDGV-GAVSQPLYTALTRLQMGLAEDEMNWTVEL 318
GSVTY G RVSY +G G VS+ LYT LT LQMGL ED M WTV L
Sbjct: 367 GSVTYKGKRVSYGEGTFGTVSKQLYTVLTSLQMGLIEDNMKWTVNL 412
>ref|NP_566923.1| branched-chain-amino-acid transaminase -like protein; protein id:
At3g49680.1, supported by cDNA: 37100., supported by
cDNA: gi_17933291, supported by cDNA: gi_20453388
[Arabidopsis thaliana] gi|26391676|sp|Q9M401|BCA3_ARATH
Branched-chain amino acid aminotransferase 3,
chloroplast precursor (Atbcat-3)
gi|8249010|emb|CAB93131.1| branched-chain amino acid
transaminase 3 [Arabidopsis thaliana]
gi|17933292|gb|AAL48229.1|AF446355_1 AT3g49680/T16K5_30
[Arabidopsis thaliana] gi|20453389|gb|AAM19933.1|
AT3g49680/T16K5_30 [Arabidopsis thaliana]
Length = 413
Score = 160 bits (406), Expect = 1e-38
Identities = 83/106 (78%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Frame = -1
Query: 632 NVISTPAVKGTILPGITRKSIIDVGRSQGFQVEERLVSVDELLDADEVFCTGTAVVVSPV 453
NVISTP +KGTILPGITRKS+IDV R+QGFQVEER V+VDELL+ADEVFCTGTAVVVSPV
Sbjct: 307 NVISTPEIKGTILPGITRKSMIDVARTQGFQVEERNVTVDELLEADEVFCTGTAVVVSPV 366
Query: 452 GSVTYLGDRVSYRDGV-GAVSQPLYTALTRLQMGLAEDEMNWTVEL 318
GSVTY G RVSY +G G VS+ LYT LT LQMGL ED M WTV L
Sbjct: 367 GSVTYKGKRVSYGEGTFGTVSKQLYTVLTSLQMGLIEDNMKWTVNL 412
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,947,716
Number of Sequences: 1393205
Number of extensions: 10845504
Number of successful extensions: 30527
Number of sequences better than 10.0: 335
Number of HSP's better than 10.0 without gapping: 27794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30194
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
