Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002335A_C01 KMC002335A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL57201.1|AF355597_1 putative nodule membrane protein [Medic... 110 1e-23
gb|AAM91533.1| membrane related protein CP5, putative [Arabidops... 86 5e-16
ref|NP_176653.1| membrane related protein CP5, putative; protein... 85 6e-16
gb|AAD28760.1|AF130253_1 membrane related protein CP5 [Arabidops... 83 3e-15
dbj|BAB11579.1| membrane related protein-like [Arabidopsis thali... 57 2e-07
>gb|AAL57201.1|AF355597_1 putative nodule membrane protein [Medicago sativa]
Length = 424
Score = 110 bits (276), Expect = 1e-23
Identities = 59/83 (71%), Positives = 74/83 (89%), Gaps = 4/83 (4%)
Frame = -1
Query: 596 FMAQVNTKISPDYLQSIGTTENSS-ETENAVATD-KPQGVNIPKMLVIGGAVALACSLDR 423
FMA VNTKISP+YLQSIG++++ S +TE+A+ +D KP+G+ +PKMLVIGGAVALACSLD+
Sbjct: 342 FMACVNTKISPEYLQSIGSSDDESLQTESAITSDDKPKGMTVPKMLVIGGAVALACSLDK 401
Query: 422 GLVTQYVIFGVARR--FANLGKR 360
GLVT+ VIFGVA+R FANLGKR
Sbjct: 402 GLVTKAVIFGVAKRFGFANLGKR 424
>gb|AAM91533.1| membrane related protein CP5, putative [Arabidopsis thaliana]
gi|23197608|gb|AAN15331.1| membrane related protein CP5,
putative [Arabidopsis thaliana]
Length = 385
Score = 85.5 bits (210), Expect = 5e-16
Identities = 45/78 (57%), Positives = 57/78 (72%)
Frame = -1
Query: 593 MAQVNTKISPDYLQSIGTTENSSETENAVATDKPQGVNIPKMLVIGGAVALACSLDRGLV 414
MA +NTK+S + + E S E V DKP G NIPK+LV+GGA+ALAC+LD+GL+
Sbjct: 313 MAHINTKVSAEEFMN----ERGSIAE--VTEDKPTGKNIPKILVVGGAIALACTLDKGLL 366
Query: 413 TQYVIFGVARRFANLGKR 360
T+ VIFGVARRFA +GKR
Sbjct: 367 TKAVIFGVARRFARMGKR 384
>ref|NP_176653.1| membrane related protein CP5, putative; protein id: At1g64720.1,
supported by cDNA: gi_4741928 [Arabidopsis thaliana]
gi|25343851|pir||D96670 probable membrane related
protein F13O11.4 [imported] - Arabidopsis thaliana
gi|5042409|gb|AAD38248.1|AC006193_4 Putative membrane
related protein [Arabidopsis thaliana]
Length = 385
Score = 85.1 bits (209), Expect = 6e-16
Identities = 45/78 (57%), Positives = 57/78 (72%)
Frame = -1
Query: 593 MAQVNTKISPDYLQSIGTTENSSETENAVATDKPQGVNIPKMLVIGGAVALACSLDRGLV 414
MA +NTK+S + + E S E V DKP G NIPK+LV+GGA+ALAC+LD+GL+
Sbjct: 313 MAHINTKVSAEEFMN----ERGSIAE--VTGDKPTGKNIPKILVVGGAIALACTLDKGLL 366
Query: 413 TQYVIFGVARRFANLGKR 360
T+ VIFGVARRFA +GKR
Sbjct: 367 TKAVIFGVARRFARMGKR 384
>gb|AAD28760.1|AF130253_1 membrane related protein CP5 [Arabidopsis thaliana]
Length = 387
Score = 82.8 bits (203), Expect = 3e-15
Identities = 43/79 (54%), Positives = 57/79 (71%), Gaps = 1/79 (1%)
Frame = -1
Query: 593 MAQVNTKISPD-YLQSIGTTENSSETENAVATDKPQGVNIPKMLVIGGAVALACSLDRGL 417
MA +NTK+S + ++ G+ V DKP G NIPK+LV+GGA+ALAC+LD+GL
Sbjct: 315 MAHINTKVSAEEFMMRRGSIAE-------VTGDKPTGKNIPKILVVGGAIALACTLDKGL 367
Query: 416 VTQYVIFGVARRFANLGKR 360
+T+ VIFGVARRFA +GKR
Sbjct: 368 LTKAVIFGVARRFARMGKR 386
>dbj|BAB11579.1| membrane related protein-like [Arabidopsis thaliana]
Length = 400
Score = 56.6 bits (135), Expect = 2e-07
Identities = 34/81 (41%), Positives = 49/81 (59%), Gaps = 2/81 (2%)
Frame = -1
Query: 596 FMAQVNTKISPDYLQSIGTTENSSETENAVATDKP-QGVNIPKMLVIGGAVALACSLDRG 420
FMAQ+NTKI+ D+L S+ S TE V ++ + N+ K+L+IGGAVA+ CSL G
Sbjct: 305 FMAQINTKITQDHLISLSNGA-SPVTETPVTLNQGNRAANLKKLLIIGGAVAVVCSLSGG 363
Query: 419 -LVTQYVIFGVARRFANLGKR 360
V + G +RF N G++
Sbjct: 364 AFVPPAFLLGFGKRFVNGGRK 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,050,271
Number of Sequences: 1393205
Number of extensions: 10545155
Number of successful extensions: 25972
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 25135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25959
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
