Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002327A_C01 KMC002327A_c01
(415 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_571515.1| neuropeptide Y/peptide YY receptor YA [Danio re... 31 3.2
ref|NP_669162.1| hypothetical [Yersinia pestis KIM] gi|21958659|... 31 3.2
gb|AAK62983.1|AF384668_1 DNA/RNA non-specific nuclease [Coccidio... 31 3.2
gb|AAF08162.1| NADH dehydrogenase subunit F [Ilex crenata] 31 4.1
ref|NP_013158.1| Hypothetical ORF; Ylr057wp [Saccharomyces cerev... 30 5.4
>ref|NP_571515.1| neuropeptide Y/peptide YY receptor YA [Danio rerio]
gi|3098346|gb|AAC41276.1| neuropeptide Y/peptide YY
receptor Ya [Danio rerio]
Length = 377
Score = 31.2 bits (69), Expect = 3.2
Identities = 10/27 (37%), Positives = 22/27 (81%)
Frame = -1
Query: 337 LSRICTLLSLNSTCVSPVLTSFISADY 257
L +C LL+++STCV+P++ F+++++
Sbjct: 307 LFSLCHLLAMSSTCVNPIIYGFLNSNF 333
>ref|NP_669162.1| hypothetical [Yersinia pestis KIM]
gi|21958659|gb|AAM85413.1|AE013787_10 hypothetical
[Yersinia pestis KIM]
Length = 736
Score = 31.2 bits (69), Expect = 3.2
Identities = 18/61 (29%), Positives = 32/61 (51%)
Frame = -2
Query: 255 NFMNCDCGSLHFRCSHGVR*FSVCILVVVENTFQSFIFVSLKTVRTPKSSFSVLNLHECN 76
+ CDC L VR F+V + +N+F+S + + + T+ P ++FS L ++ N
Sbjct: 3 SIQKCDCNYL-------VR-FAVSDSFIRDNSFRSLLAIFMVTIFVPNTAFSQLYVNNAN 54
Query: 75 D 73
D
Sbjct: 55 D 55
>gb|AAK62983.1|AF384668_1 DNA/RNA non-specific nuclease [Coccidioides immitis]
Length = 335
Score = 31.2 bits (69), Expect = 3.2
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 187 HAKLPNSMRASEMEAPTVTIHKISNLLI*KKLTLEKHKWNLN*GACRF*TKQIALASGNK 366
+A++PN S+ E P + + S L KL ++ K C ++ A A+ K
Sbjct: 271 NARIPNEKSLSDFEVPLEAVERASGLEFTSKLAADRKKRLCQEVKCEIMVREFAKATNRK 330
Query: 367 PIP 375
+P
Sbjct: 331 ALP 333
>gb|AAF08162.1| NADH dehydrogenase subunit F [Ilex crenata]
Length = 752
Score = 30.8 bits (68), Expect = 4.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 358 HLPELFALSRICTLLSLNSTCVSPVLTSFISADY*FYEL*LWEPPFQMLAWS 203
H+P +++I LL S C P L F S D ++ L+ P F ++AWS
Sbjct: 390 HVP----ITKIAFLLGTLSLCGIPPLACFWSKDEILHDSWLYSPLFAIIAWS 437
>ref|NP_013158.1| Hypothetical ORF; Ylr057wp [Saccharomyces cerevisiae]
gi|2132671|pir||S61631 probable membrane protein YLR057w
- yeast (Saccharomyces cerevisiae)
gi|1181278|emb|CAA64304.1| L2153 [Saccharomyces
cerevisiae] gi|1360400|emb|CAA97587.1| ORF YLR057w
[Saccharomyces cerevisiae]
Length = 849
Score = 30.4 bits (67), Expect = 5.4
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -2
Query: 171 VENTFQSFIFVSLKTVRTPKSSFSVLNLHECNDSFPSFISYIHSSL*SDEIN 16
V + FI +SL T ++ +LN + NDS PS +Y H++ S +++
Sbjct: 14 VRSVLLLFITISLLFYYTFQNEIDILNSYALNDSLPSINNYEHNTEGSSKLD 65
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,327,546
Number of Sequences: 1393205
Number of extensions: 6048435
Number of successful extensions: 15827
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15826
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
