Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002326A_C01 KMC002326A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193466.1| putative protein; protein id: At4g17350.1 [Arab... 162 2e-39
ref|NP_199555.1| putative protein; protein id: At5g47440.1 [Arab... 145 3e-34
emb|CAC39075.1| putative protein [Oryza sativa] 102 2e-21
gb|AAL79791.1|AC079874_14 unknown protein [Oryza sativa] 100 2e-20
gb|AAO41942.1| unknown protein [Arabidopsis thaliana] 99 2e-20
>ref|NP_193466.1| putative protein; protein id: At4g17350.1 [Arabidopsis thaliana]
gi|7485185|pir||G71442 hypothetical protein -
Arabidopsis thaliana gi|2245094|emb|CAB10516.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268487|emb|CAB78738.1| hypothetical protein
[Arabidopsis thaliana]
Length = 383
Score = 162 bits (410), Expect = 2e-39
Identities = 76/110 (69%), Positives = 93/110 (84%)
Frame = -2
Query: 502 KHVTVYINKKSQVKLKIKSKHVGGAFSKKNKCVVYGVCDEDTAWPYRKEREASGDLYFGI 323
K V VYINKKSQV +K+KSKHVGGAFSKK KCVVYGVCDE +AWPYRKERE S ++YFG+
Sbjct: 274 KRVCVYINKKSQVMIKLKSKHVGGAFSKKIKCVVYGVCDEKSAWPYRKERENSEEVYFGL 333
Query: 322 KTAQGLLEFKCESELHKQKWVEGIEFLLGRVNSFEATERSLLFLNISTST 173
KT QGLLEFKC+S++HKQ+WV+G++ LL +VN FEA + SL LN++ T
Sbjct: 334 KTGQGLLEFKCKSKIHKQRWVDGVQSLLRQVNCFEAAKCSLGSLNLTGHT 383
>ref|NP_199555.1| putative protein; protein id: At5g47440.1 [Arabidopsis thaliana]
gi|9758771|dbj|BAB09069.1|
gene_id:MNJ7.2~pir||G71442~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 406
Score = 145 bits (365), Expect = 3e-34
Identities = 71/107 (66%), Positives = 86/107 (80%)
Frame = -2
Query: 502 KHVTVYINKKSQVKLKIKSKHVGGAFSKKNKCVVYGVCDEDTAWPYRKEREASGDLYFGI 323
K V VYINKKSQV +K+KSKHVGGAFSKK KCVVYGVCDE +AWP RKERE S ++YFG+
Sbjct: 296 KRVCVYINKKSQVMIKLKSKHVGGAFSKKIKCVVYGVCDEISAWPCRKERENSEEVYFGL 355
Query: 322 KTAQGLLEFKCESELHKQKWVEGIEFLLGRVNSFEATERSLLFLNIS 182
KT QGLLEFKC+S++ KQ+WV GI+ L V+ EA + SL L++S
Sbjct: 356 KTGQGLLEFKCKSKIQKQRWVAGIQSNLRLVSCLEAAKCSLESLSLS 402
>emb|CAC39075.1| putative protein [Oryza sativa]
Length = 394
Score = 102 bits (255), Expect = 2e-21
Identities = 59/121 (48%), Positives = 73/121 (59%), Gaps = 12/121 (9%)
Frame = -2
Query: 502 KHVTVYINKKSQVKLKIKSKHVGGAFSKKNKCVVYGVCDEDTAWPY-----------RKE 356
K V VYINKKSQV +K+KSKH+GGAFSKK K VVYGV D+ AWP E
Sbjct: 274 KRVAVYINKKSQVIVKLKSKHIGGAFSKKKKSVVYGVDDDVQAWPAPHACGGGAVPPAPE 333
Query: 355 REASGDLYFGIKTAQGLLEFKCESELHKQKWVEGIEFLLGRVNSFEA-TERSLLFLNIST 179
+S FG++TAQG++EF+CES KQ WVE ++ LL + A E S L +S
Sbjct: 334 TASSEKCQFGLRTAQGVVEFQCESRAQKQDWVESVKNLLRQAAGGTAQLEHSFESLRLSA 393
Query: 178 S 176
S
Sbjct: 394 S 394
>gb|AAL79791.1|AC079874_14 unknown protein [Oryza sativa]
Length = 379
Score = 99.8 bits (247), Expect = 2e-20
Identities = 50/105 (47%), Positives = 70/105 (66%)
Frame = -2
Query: 496 VTVYINKKSQVKLKIKSKHVGGAFSKKNKCVVYGVCDEDTAWPYRKEREASGDLYFGIKT 317
V++YINK+SQV LK+KSKH+GGA SKKNK VV+GV +E W + FG+ T
Sbjct: 275 VSIYINKRSQVILKLKSKHIGGALSKKNKSVVFGVYNELPTWVEAGKHFTEERCCFGLST 334
Query: 316 AQGLLEFKCESELHKQKWVEGIEFLLGRVNSFEATERSLLFLNIS 182
AQGL+EF+CE+ KQ+WV+ ++ LL +V + E E L + +S
Sbjct: 335 AQGLVEFECENSTSKQRWVDDVKNLLRQVAAEEQVENKLGSVKLS 379
>gb|AAO41942.1| unknown protein [Arabidopsis thaliana]
Length = 429
Score = 99.4 bits (246), Expect = 2e-20
Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = -2
Query: 502 KHVTVYINKKSQVKLKIKSKHVGGAFSKKNKCVVYGVCDEDTAWPYRKERE-ASGDLYFG 326
KHV VYINKKSQV ++IKSKHV GAFS K+K +V VC+ + K+ E +LYFG
Sbjct: 320 KHVKVYINKKSQVIVEIKSKHVVGAFSMKSKGIVNDVCETVSGLQNGKDTENTEEELYFG 379
Query: 325 IKTAQGLLEFKCESELHKQKWVEGIEFLLGRVNSFEATERSLLFLNISTST 173
I T +GL +FKC+S+ KQ WV+ I LL RV + E + SL +NI+ ST
Sbjct: 380 IGTGKGLTKFKCKSKADKQTWVDSIRNLLHRVTAVE-VDTSLETININDST 429
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,337,290
Number of Sequences: 1393205
Number of extensions: 8036819
Number of successful extensions: 20605
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20592
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
