Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002324A_C01 KMC002324A_c01
(355 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190397.1| B12D-like protein; protein id: At3g48140.1, sup... 75 3e-13
gb|AAD22104.1| B12D protein [Ipomoea batatas] 75 3e-13
gb|AAB65433.1| HvB12D homolog [Oryza sativa] gi|18644696|gb|AAL7... 64 5e-10
pir||S60284 B12D protein - barley gi|471319|emb|CAA54065.1| HvB1... 62 2e-09
ref|NP_189632.1| gene_id:K17E7.15~unknown protein; protein id: A... 61 4e-09
>ref|NP_190397.1| B12D-like protein; protein id: At3g48140.1, supported by cDNA:
gi_19698958 [Arabidopsis thaliana]
gi|7487384|pir||T13003 hypothetical protein T24C20.20 -
Arabidopsis thaliana gi|5541720|emb|CAB51061.1|
B12D-like protein [Arabidopsis thaliana]
gi|19698959|gb|AAL91215.1| B12D-like protein
[Arabidopsis thaliana] gi|24899711|gb|AAN65070.1|
B12D-like protein [Arabidopsis thaliana]
Length = 88
Score = 74.7 bits (182), Expect = 3e-13
Identities = 33/48 (68%), Positives = 40/48 (82%)
Frame = -3
Query: 341 RVTKQNRAAGILDNFEEGEKYSQHFVRKFVRGKDTQIMPSINKFFSDP 198
R TK+NRAAGILDN EGEKY ++F+RKFVR K +IMP +NKFF+DP
Sbjct: 39 RCTKENRAAGILDNHAEGEKYKENFLRKFVRNKKPEIMPGLNKFFTDP 86
>gb|AAD22104.1| B12D protein [Ipomoea batatas]
Length = 90
Score = 74.7 bits (182), Expect = 3e-13
Identities = 31/48 (64%), Positives = 42/48 (86%)
Frame = -3
Query: 341 RVTKQNRAAGILDNFEEGEKYSQHFVRKFVRGKDTQIMPSINKFFSDP 198
RV K+ RAAG+L+N+EEG+KY++H +RKFVR K +IMPS+N+FFSDP
Sbjct: 40 RVNKEGRAAGVLENYEEGKKYAEHSLRKFVRNKSPEIMPSLNRFFSDP 87
>gb|AAB65433.1| HvB12D homolog [Oryza sativa] gi|18644696|gb|AAL76334.1| putative
G-box binding protein [Oryza sativa]
Length = 89
Score = 63.9 bits (154), Expect = 5e-10
Identities = 27/48 (56%), Positives = 38/48 (78%)
Frame = -3
Query: 341 RVTKQNRAAGILDNFEEGEKYSQHFVRKFVRGKDTQIMPSINKFFSDP 198
RV K RAAG+L+N EEG +Y++H +R +VR K +IMP+INKFF++P
Sbjct: 40 RVNKVGRAAGVLENHEEGRRYAEHGLRNYVRDKTPEIMPAINKFFTEP 87
>pir||S60284 B12D protein - barley gi|471319|emb|CAA54065.1| HvB12D [Hordeum
vulgare subsp. vulgare] gi|3445292|emb|CAA70936.1|
B12Dg1 [Hordeum vulgare subsp. vulgare]
Length = 87
Score = 62.0 bits (149), Expect = 2e-09
Identities = 26/48 (54%), Positives = 37/48 (76%)
Frame = -3
Query: 341 RVTKQNRAAGILDNFEEGEKYSQHFVRKFVRGKDTQIMPSINKFFSDP 198
RV+K RAAG+L+N EEG +Y++H +R +V+ K +IMP INKFF+ P
Sbjct: 39 RVSKMGRAAGVLENHEEGRRYAEHGLRAYVQDKTPEIMPGINKFFTSP 86
>ref|NP_189632.1| gene_id:K17E7.15~unknown protein; protein id: At3g29970.1
[Arabidopsis thaliana] gi|13477085|dbj|BAB02998.1|
gene_id:K17E7.15~unknown protein [Arabidopsis thaliana]
Length = 87
Score = 60.8 bits (146), Expect = 4e-09
Identities = 25/46 (54%), Positives = 37/46 (80%)
Frame = -3
Query: 341 RVTKQNRAAGILDNFEEGEKYSQHFVRKFVRGKDTQIMPSINKFFS 204
R+ K++R GIL+N +EGEKY+QH RK++R + Q+MPS+N+FFS
Sbjct: 38 RINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFS 83
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,284,418
Number of Sequences: 1393205
Number of extensions: 4828221
Number of successful extensions: 10219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10217
length of database: 448,689,247
effective HSP length: 93
effective length of database: 319,121,182
effective search space used: 7658908368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
