Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002320A_C01 KMC002320A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM34283.1|AF509341_1 putative ras-related GTP binding protei... 32 3.6
gb|EAA19917.1| Arabidopsis thaliana BRAHMA ortholog [Plasmodium ... 32 3.6
ref|NP_569014.1| bHLH protein; protein id: At5g65640.1, supporte... 31 6.1
ref|XP_154009.1| hypothetical protein XP_154009 [Mus musculus] 31 6.1
ref|NP_704798.1| protein kinase, putative [Plasmodium falciparum... 31 6.1
>gb|AAM34283.1|AF509341_1 putative ras-related GTP binding protein Mad10 [Magnaporthe grisea]
Length = 188
Score = 32.0 bits (71), Expect = 3.6
Identities = 16/52 (30%), Positives = 30/52 (56%)
Frame = +1
Query: 253 DSQFSNPLSYPNQIFSPT*EIK*SKSKETHNQENKKQNKKVHSYVYIYSLKS 408
++ FS ++Y NQI+S EI + ++ ++ N K +H Y+ +YS+ S
Sbjct: 40 ENTFSKEITYKNQIYST--EIVDTAGQDEYSILNSKHFVGIHGYIIVYSVGS 89
>gb|EAA19917.1| Arabidopsis thaliana BRAHMA ortholog [Plasmodium yoelii yoelii]
Length = 791
Score = 32.0 bits (71), Expect = 3.6
Identities = 15/47 (31%), Positives = 28/47 (58%)
Frame = +2
Query: 230 PTYYK*RKTVNLVTPYPTQIKSFLLLEKLNSRNQKKPTIRKTKNKTK 370
P YK +K + ++ PY + +K +L ++++ +KK +K K KTK
Sbjct: 158 PKKYKSKKLIKIMKPYHSPLKYIILKDEMHEDEEKK---KKYKEKTK 201
>ref|NP_569014.1| bHLH protein; protein id: At5g65640.1, supported by cDNA: 13267.
[Arabidopsis thaliana]
Length = 351
Score = 31.2 bits (69), Expect = 6.1
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 226 PAYILQIKKDSQFSNPLSYPNQIFSPT*EIK*SKSKET---HNQENKKQNKKV 375
P ILQ ++ F+NP+SYP SP E SKS + NKK++KK+
Sbjct: 124 PPLILQNGQEENFNNPMSYP----SPLMESDQSKSFSVGYCGGETNKKKSKKL 172
>ref|XP_154009.1| hypothetical protein XP_154009 [Mus musculus]
Length = 281
Score = 31.2 bits (69), Expect = 6.1
Identities = 15/48 (31%), Positives = 24/48 (49%)
Frame = +2
Query: 218 EICQPTYYK*RKTVNLVTPYPTQIKSFLLLEKLNSRNQKKPTIRKTKN 361
E+C + +K + +VTPYP Q + S N + P +R+ KN
Sbjct: 81 EVCNASIHKDARRYPMVTPYPYQENNCFTPIYPQSSNPRAPRVREKKN 128
>ref|NP_704798.1| protein kinase, putative [Plasmodium falciparum 3D7]
gi|23505160|emb|CAD51941.1| protein kinase, putative
[Plasmodium falciparum 3D7]
Length = 1277
Score = 31.2 bits (69), Expect = 6.1
Identities = 27/95 (28%), Positives = 43/95 (44%)
Frame = +2
Query: 191 KNFHHYCHYEICQPTYYK*RKTVNLVTPYPTQIKSFLLLEKLNSRNQKKPTIRKTKNKTK 370
KN+ Y +YEI Q KT N + + Q+ L K+N + +K + K K
Sbjct: 425 KNYEQYKNYEINQ-------KTQNNILRF--QMYQQLAQFKINKK-------KKKEKKRK 468
Query: 371 KFTVMSIYIALNPLTNSCSCFIHLLTPKTEPQYNN 475
K ++I+ + +S S + L+ KTE NN
Sbjct: 469 KEEYYKLFISHYNINSSASNNLKLINQKTEDNNNN 503
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,832,280
Number of Sequences: 1393205
Number of extensions: 7744753
Number of successful extensions: 18164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18126
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
