Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002319A_C01 KMC002319A_c01
(733 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB63650.1| Myb-related transcription activator (MybSt1) isol... 80 3e-14
ref|NP_188256.1| putative MYB family transcription factor; prote... 80 3e-14
pir||S51839 D13F(MYBST1) protein - potato 78 1e-13
gb|AAB32591.2| MybSt1 [Solanum tuberosum] 78 1e-13
dbj|BAB03423.1| unnamed protein product [Oryza sativa (japonica ... 76 6e-13
>gb|AAB63650.1| Myb-related transcription activator (MybSt1) isolog [Arabidopsis
thaliana] gi|9279717|dbj|BAB01274.1| Myb-related
transcription activator [Arabidopsis thaliana]
Length = 369
Score = 80.1 bits (196), Expect = 3e-14
Identities = 46/79 (58%), Positives = 57/79 (71%), Gaps = 2/79 (2%)
Frame = -3
Query: 683 HEILKPIPVIPKEPVNVDELVGLSHLSIGETQVRDRE--PSPLSLKLLGEPSRQSAFHAN 510
H++LKP P KE VN+DELVG+S LSIG + E PSPLSL+L EPSR SAFH+N
Sbjct: 294 HQVLKPKPGFAKERVNMDELVGMSQLSIGMATRHETETSPSPLSLRL--EPSRPSAFHSN 351
Query: 509 APVSSSDLNSGKNSAIQAV 453
V+ +DL+ G NSAIQA+
Sbjct: 352 GSVNGADLSKG-NSAIQAI 369
>ref|NP_188256.1| putative MYB family transcription factor; protein id: At3g16350.1
[Arabidopsis thaliana] gi|29028776|gb|AAO64767.1|
At3g16350 [Arabidopsis thaliana]
Length = 387
Score = 80.1 bits (196), Expect = 3e-14
Identities = 46/79 (58%), Positives = 57/79 (71%), Gaps = 2/79 (2%)
Frame = -3
Query: 683 HEILKPIPVIPKEPVNVDELVGLSHLSIGETQVRDRE--PSPLSLKLLGEPSRQSAFHAN 510
H++LKP P KE VN+DELVG+S LSIG + E PSPLSL+L EPSR SAFH+N
Sbjct: 312 HQVLKPKPGFAKERVNMDELVGMSQLSIGMATRHETETSPSPLSLRL--EPSRPSAFHSN 369
Query: 509 APVSSSDLNSGKNSAIQAV 453
V+ +DL+ G NSAIQA+
Sbjct: 370 GSVNGADLSKG-NSAIQAI 387
>pir||S51839 D13F(MYBST1) protein - potato
Length = 342
Score = 77.8 bits (190), Expect = 1e-13
Identities = 41/71 (57%), Positives = 49/71 (68%)
Frame = -3
Query: 683 HEILKPIPVIPKEPVNVDELVGLSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAP 504
HE+LKPI V K P+NVDELVG+S LS+GE+ +P LSLKL+ SRQSAFHAN
Sbjct: 267 HEVLKPIAVHSKSPINVDELVGMSKLSLGESIGDAAKPPSLSLKLVEGSSRQSAFHANPS 326
Query: 503 VSSSDLNSGKN 471
SS +NS N
Sbjct: 327 SGSSGMNSSHN 337
>gb|AAB32591.2| MybSt1 [Solanum tuberosum]
Length = 342
Score = 77.8 bits (190), Expect = 1e-13
Identities = 41/71 (57%), Positives = 49/71 (68%)
Frame = -3
Query: 683 HEILKPIPVIPKEPVNVDELVGLSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAP 504
HE+LKPI V K P+NVDELVG+S LS+GE+ +P LSLKL+ SRQSAFHAN
Sbjct: 267 HEVLKPIAVHSKSPINVDELVGMSKLSLGESIGDAAKPPSLSLKLVEGSSRQSAFHANPS 326
Query: 503 VSSSDLNSGKN 471
SS +NS N
Sbjct: 327 SGSSGMNSSHN 337
>dbj|BAB03423.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9711831|dbj|BAB07930.1| putative Myb-related
transcription activator (MybSt1) [Oryza sativa (japonica
cultivar-group)]
Length = 347
Score = 75.9 bits (185), Expect = 6e-13
Identities = 43/80 (53%), Positives = 53/80 (65%), Gaps = 2/80 (2%)
Frame = -3
Query: 686 HHEILKPIPVIPKEPVN-VDELVGLSHLSIGETQVRDREPSPLSLKLLGEPS-RQSAFHA 513
+HEILKP PV KE +N DE+VG+S L+IG+ EPS LSL+L G + RQSAFH
Sbjct: 268 NHEILKPTPVNGKEVINKADEVVGMSKLTIGDGSSNSIEPSALSLQLTGPTNTRQSAFHV 327
Query: 512 NAPVSSSDLNSGKNSAIQAV 453
N P++ DLN NS I AV
Sbjct: 328 NPPMAGPDLNKRNNSPIHAV 347
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 626,100,355
Number of Sequences: 1393205
Number of extensions: 13513701
Number of successful extensions: 29453
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 28566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29435
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
