Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002317A_C01 KMC002317A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08646.1| gene_id:K15E6.11~unknown protein [Arabidopsis th... 116 2e-25
ref|NP_568560.1| Expressed protein; protein id: At5g38895.1, sup... 116 2e-25
ref|NP_566169.1| expressed protein; protein id: At3g02290.1, sup... 113 2e-24
gb|AAF02127.1|AC009755_20 unknown protein [Arabidopsis thaliana] 113 2e-24
ref|NP_197083.1| putative protein; protein id: At5g15790.1 [Arab... 110 9e-24
>dbj|BAB08646.1| gene_id:K15E6.11~unknown protein [Arabidopsis thaliana]
Length = 223
Score = 116 bits (290), Expect = 2e-25
Identities = 49/75 (65%), Positives = 57/75 (75%)
Frame = -3
Query: 553 FHQPNITTGVGVIYASSKKEDVCPTCLEEYTTENPKIMTKCFHHFHLGCIYEWMERSDNC 374
F + G+ V YA S ED+CPTCL++YT ENPKI+TKC HHFHL CIYEWMERS+ C
Sbjct: 149 FTKSKTMPGIEVYYADSDDEDICPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETC 208
Query: 373 PVCGKVMLFDESTFS 329
PVCGKVM FDE+ S
Sbjct: 209 PVCGKVMAFDENETS 223
>ref|NP_568560.1| Expressed protein; protein id: At5g38895.1, supported by cDNA:
gi_14334947 [Arabidopsis thaliana]
gi|14334948|gb|AAK59651.1| unknown protein [Arabidopsis
thaliana] gi|23297720|gb|AAN12910.1| unknown protein
[Arabidopsis thaliana]
Length = 221
Score = 116 bits (290), Expect = 2e-25
Identities = 49/75 (65%), Positives = 57/75 (75%)
Frame = -3
Query: 553 FHQPNITTGVGVIYASSKKEDVCPTCLEEYTTENPKIMTKCFHHFHLGCIYEWMERSDNC 374
F + G+ V YA S ED+CPTCL++YT ENPKI+TKC HHFHL CIYEWMERS+ C
Sbjct: 147 FTKSKTMPGIEVYYADSDDEDICPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETC 206
Query: 373 PVCGKVMLFDESTFS 329
PVCGKVM FDE+ S
Sbjct: 207 PVCGKVMAFDENETS 221
>ref|NP_566169.1| expressed protein; protein id: At3g02290.1, supported by cDNA:
156940. [Arabidopsis thaliana]
gi|21553680|gb|AAM62773.1| unknown [Arabidopsis
thaliana]
Length = 231
Score = 113 bits (282), Expect = 2e-24
Identities = 47/60 (78%), Positives = 54/60 (89%)
Frame = -3
Query: 517 IYASSKKEDVCPTCLEEYTTENPKIMTKCFHHFHLGCIYEWMERSDNCPVCGKVMLFDES 338
+Y S+ EDVCPTCLEEYT+ENPKI+TKC HHFHL CIYEWMERS+NCPVCGKVM F+E+
Sbjct: 171 MYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
>gb|AAF02127.1|AC009755_20 unknown protein [Arabidopsis thaliana]
Length = 67
Score = 113 bits (282), Expect = 2e-24
Identities = 47/60 (78%), Positives = 54/60 (89%)
Frame = -3
Query: 517 IYASSKKEDVCPTCLEEYTTENPKIMTKCFHHFHLGCIYEWMERSDNCPVCGKVMLFDES 338
+Y S+ EDVCPTCLEEYT+ENPKI+TKC HHFHL CIYEWMERS+NCPVCGKVM F+E+
Sbjct: 7 MYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 66
>ref|NP_197083.1| putative protein; protein id: At5g15790.1 [Arabidopsis thaliana]
gi|11357423|pir||T51408 hypothetical protein F14F8_170 -
Arabidopsis thaliana gi|9755624|emb|CAC01778.1| putative
protein [Arabidopsis thaliana]
gi|22655214|gb|AAM98197.1| unknown protein [Arabidopsis
thaliana]
Length = 232
Score = 110 bits (276), Expect = 9e-24
Identities = 46/60 (76%), Positives = 52/60 (86%)
Frame = -3
Query: 517 IYASSKKEDVCPTCLEEYTTENPKIMTKCFHHFHLGCIYEWMERSDNCPVCGKVMLFDES 338
+Y +S EDVCPTCLEEY +ENPKI+TKC HHFHL CIYEWMERS+NCPVCGKVM F E+
Sbjct: 172 LYITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHET 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,679,023
Number of Sequences: 1393205
Number of extensions: 9989387
Number of successful extensions: 29859
Number of sequences better than 10.0: 1109
Number of HSP's better than 10.0 without gapping: 28844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29806
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
