Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002311A_C01 KMC002311A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB69642.1| peptide transporter [Lotus japonicus] 189 2e-47
ref|NP_181578.1| putative PTR2 family peptide transporter; prote... 121 6e-27
gb|AAL36253.1| putative PTR2 family peptide transporter protein ... 119 4e-26
ref|NP_199417.1| peptide transporter; protein id: At5g46050.1, s... 94 1e-18
gb|AAL36413.1| putative peptide transporter protein [Arabidopsis... 94 1e-18
>gb|AAB69642.1| peptide transporter [Lotus japonicus]
Length = 574
Score = 189 bits (481), Expect = 2e-47
Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 1/107 (0%)
Frame = -2
Query: 585 TGMLEFFYDQSPEEMKGLGTTLCTSCVAAGSYINTFLVTMIDKLNWIGNNLNDSHLDY-Y 409
TGMLEFFYDQSPEEMKGLGTTLCTSCVAAGSYINTFLVTMIDKLNWIGNNLNDS
Sbjct: 468 TGMLEFFYDQSPEEMKGLGTTLCTSCVAAGSYINTFLVTMIDKLNWIGNNLNDSQSRITI 527
Query: 408 YAFLFVISALNFGVFLWVSSGYIYKKGNTSTTEVHDIEMSAEKTVKY 268
F VISALNFGVFLWVSSGYIYKK NTSTTEVHDIEMSAEKTVKY
Sbjct: 528 MPFFSVISALNFGVFLWVSSGYIYKKENTSTTEVHDIEMSAEKTVKY 574
>ref|NP_181578.1| putative PTR2 family peptide transporter; protein id: At2g40460.1,
supported by cDNA: gi_17380881, supported by cDNA:
gi_20453067 [Arabidopsis thaliana]
gi|25408705|pir||G84829 probable PTR2 family peptide
transporter [imported] - Arabidopsis thaliana
gi|2651310|gb|AAB87590.1| putative PTR2 family peptide
transporter [Arabidopsis thaliana]
gi|20453068|gb|AAM19779.1| At2g40460/T2P4.19
[Arabidopsis thaliana] gi|23297804|gb|AAN13029.1|
putative PTR2 family peptide transporter [Arabidopsis
thaliana] gi|25090213|gb|AAN72253.1| At2g40460/T2P4.19
[Arabidopsis thaliana]
Length = 583
Score = 121 bits (304), Expect = 6e-27
Identities = 56/90 (62%), Positives = 70/90 (77%), Gaps = 7/90 (7%)
Frame = -2
Query: 582 GMLEFFYDQSPEEMKGLGTTLCTSCVAAGSYINTFLVTMIDKL-------NWIGNNLNDS 424
G+LEFFYDQSPEEM+ LGTT TS + G+++N+FLVTMIDK+ +WIGNNLNDS
Sbjct: 466 GLLEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDS 525
Query: 423 HLDYYYAFLFVISALNFGVFLWVSSGYIYK 334
LDYYY FL VIS +N G+F+W +S Y+YK
Sbjct: 526 RLDYYYGFLVVISIVNMGLFVWAASKYVYK 555
>gb|AAL36253.1| putative PTR2 family peptide transporter protein [Arabidopsis
thaliana]
Length = 583
Score = 119 bits (297), Expect = 4e-26
Identities = 55/90 (61%), Positives = 69/90 (76%), Gaps = 7/90 (7%)
Frame = -2
Query: 582 GMLEFFYDQSPEEMKGLGTTLCTSCVAAGSYINTFLVTMIDKL-------NWIGNNLNDS 424
G+LEFFYDQSP EM+ LGTT TS + G+++N+FLVTMIDK+ +WIGNNLNDS
Sbjct: 466 GLLEFFYDQSPGEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDS 525
Query: 423 HLDYYYAFLFVISALNFGVFLWVSSGYIYK 334
LDYYY FL VIS +N G+F+W +S Y+YK
Sbjct: 526 RLDYYYGFLVVISIVNMGLFVWAASKYVYK 555
>ref|NP_199417.1| peptide transporter; protein id: At5g46050.1, supported by cDNA:
gi_17381201 [Arabidopsis thaliana]
gi|9757725|dbj|BAB08250.1| peptide transporter
[Arabidopsis thaliana] gi|23297791|gb|AAN13027.1|
peptide transporter [Arabidopsis thaliana]
Length = 582
Score = 94.4 bits (233), Expect = 1e-18
Identities = 44/101 (43%), Positives = 69/101 (67%), Gaps = 6/101 (5%)
Frame = -2
Query: 576 LEFFYDQSPEEMKGLGTTLCTSCVAAGSYINTFLVTMIDKLN------WIGNNLNDSHLD 415
LEFFYDQ+PE MK LGT+ T+ +A G+++++FL++ + ++ WI NNLN+S LD
Sbjct: 478 LEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRLD 537
Query: 414 YYYAFLFVISALNFGVFLWVSSGYIYKKGNTSTTEVHDIEM 292
YYY F V++ +NF +FL V Y+Y+ T + +V ++EM
Sbjct: 538 YYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEM 578
>gb|AAL36413.1| putative peptide transporter protein [Arabidopsis thaliana]
Length = 582
Score = 94.0 bits (232), Expect = 1e-18
Identities = 44/101 (43%), Positives = 69/101 (67%), Gaps = 6/101 (5%)
Frame = -2
Query: 576 LEFFYDQSPEEMKGLGTTLCTSCVAAGSYINTFLVTMIDKLN------WIGNNLNDSHLD 415
LEFFYDQ+PE MK LGT+ T+ +A G+++++FL++ + ++ WI NNLN+S LD
Sbjct: 478 LEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRLD 537
Query: 414 YYYAFLFVISALNFGVFLWVSSGYIYKKGNTSTTEVHDIEM 292
YYY F V++ +NF +FL V Y+Y+ T + +V ++EM
Sbjct: 538 YYYLFFAVLNLVNFILFLVVVKFYVYRAEVTDSVDVKEVEM 578
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,497,215
Number of Sequences: 1393205
Number of extensions: 9875375
Number of successful extensions: 25161
Number of sequences better than 10.0: 191
Number of HSP's better than 10.0 without gapping: 24257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24990
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
