KMC002310A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC002310A_C01 KMC002310A_c01
aATTTAAATCACGTTTACTCAGAAGCTACTTCATCCGAAGGGGTTCTAATTAAAACATTT
CATCAGGGACTAAATCATGTTATACAACAACACAGGCACTTGAAGCACCACATGTGGAAG
TAAAATGAAAATTTATTACCAAGAAAGAAAATATAATTAAATCTCTGGTGTTAGTTACAA
AGTAATACAAGGTCTATGTCGTGTGCATACGGTGATTTTTAATAGATATAACCACCAAAG
TATCCTTGGTCCATCCCTGTCTGCAACTTCAGTGACATCTTTGACAAGGTATTGGGCAAG
ATCAAACAACTGCACCCAGAAAGCTGACTAAATCAAAACAAGCATTTACAGGACCTCTAT
TCTGATTGAAGCCTGTAATCAAGCATGTCCCTGATATTTAACCTAACTGATGGTCCCATG
GCTGAGCATATGTGTGCGCTTTTCCAGTACACACCTTTAGCACCAGAAGGTGTGGTTGGC
CTCTACTGATTTCTGTGAAATTTAGACAATTGAGTTAAAAGCTTATCATGGAGTGAAACA
CAGTTTAGAAAGGCTGCTCAGGGAAGAACATACTATTGCAGCAAGCAAGTTTACAAGTAG
ATCCTCTTCTGGAAAGTCAGCTTTTCCGAAAGGCAAGTGCACGATTCCAGTTTTGTCTGC
CCTGTATTCAACTTTTCCCTGCTTGAATTCTGATATAGCCTGAGGAATATnGGCTGTTAC
AGTGCCAGCTTTTGGATTTGGCATCAGCCCTCT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002310A_C01 KMC002310A_c01
(753 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51934 ribosomal protein L1 protein [imported] - Arabidopsi... 105 6e-35
ref|NP_191908.1| chloroplast ribosomal L1 - like protein; protei... 105 6e-35
pir||T51935 ribosomal protein L1 [imported] - spinach gi|7414578... 95 1e-31
ref|NP_681087.1| 50S ribosomal protein L1 [Thermosynechococcus e... 89 4e-23
ref|NP_053948.1| ribosomal protein L1 [Porphyra purpurea] gi|171... 91 5e-23
>pir||T51934 ribosomal protein L1 protein [imported] - Arabidopsis thaliana
gi|7572940|emb|CAA62364.1| L1 protein [Arabidopsis
thaliana]
Length = 346
Score = 105 bits (263), Expect(2) = 6e-35
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = -1
Query: 753 RGLMPNPKAGTVTAXIPQAISEFKQGKVEYRADKTGIVHLPFGKADFPEEDLLVNLLAAI 574
RGLMPNPKAGTVTA IPQAI EFK+GKVE+RADKTGIVH+PFGK +F EEDLL+N LAA+
Sbjct: 242 RGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAV 301
Score = 64.3 bits (155), Expect(2) = 6e-35
Identities = 25/33 (75%), Positives = 32/33 (96%)
Frame = -2
Query: 470 PSGAKGVYWKSAHICSAMGPSVRLNIRDMLDYR 372
P GAKGVYWKSAHICS+MGPS++LNIR+M+D++
Sbjct: 309 PKGAKGVYWKSAHICSSMGPSIKLNIREMIDFK 341
>ref|NP_191908.1| chloroplast ribosomal L1 - like protein; protein id: At3g63490.1,
supported by cDNA: gi_15450736, supported by cDNA:
gi_16649118 [Arabidopsis thaliana]
gi|11358771|pir||T49190 ribosomal protein L1-like
protein - Arabidopsis thaliana
gi|7573332|emb|CAB87802.1| chloroplast ribosomal L1-like
protein [Arabidopsis thaliana]
gi|15450737|gb|AAK96640.1| AT3g63490/MAA21_120
[Arabidopsis thaliana] gi|16649119|gb|AAL24411.1|
chloroplast ribosomal L1-like protein [Arabidopsis
thaliana] gi|22137008|gb|AAM91349.1| At3g63490/MAA21_120
[Arabidopsis thaliana] gi|24899727|gb|AAN65078.1|
chloroplast ribosomal L1-like protein [Arabidopsis
thaliana]
Length = 346
Score = 105 bits (263), Expect(2) = 6e-35
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = -1
Query: 753 RGLMPNPKAGTVTAXIPQAISEFKQGKVEYRADKTGIVHLPFGKADFPEEDLLVNLLAAI 574
RGLMPNPKAGTVTA IPQAI EFK+GKVE+RADKTGIVH+PFGK +F EEDLL+N LAA+
Sbjct: 242 RGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAV 301
Score = 64.3 bits (155), Expect(2) = 6e-35
Identities = 25/33 (75%), Positives = 32/33 (96%)
Frame = -2
Query: 470 PSGAKGVYWKSAHICSAMGPSVRLNIRDMLDYR 372
P GAKGVYWKSAHICS+MGPS++LNIR+M+D++
Sbjct: 309 PKGAKGVYWKSAHICSSMGPSIKLNIREMIDFK 341
>pir||T51935 ribosomal protein L1 [imported] - spinach
gi|7414578|emb|CAA54255.1| ribosomal protein L1
[Spinacia oleracea]
Length = 352
Score = 94.7 bits (234), Expect(2) = 1e-31
Identities = 43/60 (71%), Positives = 50/60 (82%)
Frame = -1
Query: 753 RGLMPNPKAGTVTAXIPQAISEFKQGKVEYRADKTGIVHLPFGKADFPEEDLLVNLLAAI 574
RGLMP PKAGTVT + QA+ EFK+GKVE+R DKTGIVH+PFGK +F EEDLL+NL A I
Sbjct: 248 RGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATI 307
Score = 64.3 bits (155), Expect(2) = 1e-31
Identities = 27/33 (81%), Positives = 32/33 (96%)
Frame = -2
Query: 470 PSGAKGVYWKSAHICSAMGPSVRLNIRDMLDYR 372
P+GAKGVYWKSAHI S+MGPS+RLNIR+MLDY+
Sbjct: 315 PTGAKGVYWKSAHISSSMGPSIRLNIREMLDYK 347
>ref|NP_681087.1| 50S ribosomal protein L1 [Thermosynechococcus elongatus BP-1]
gi|22294017|dbj|BAC07849.1| 50S ribosomal protein L1
[Thermosynechococcus elongatus BP-1]
Length = 237
Score = 89.0 bits (219), Expect(2) = 4e-23
Identities = 43/58 (74%), Positives = 49/58 (84%)
Frame = -1
Query: 753 RGLMPNPKAGTVTAXIPQAISEFKQGKVEYRADKTGIVHLPFGKADFPEEDLLVNLLA 580
RGLMP+PKAGTVT +PQAI EFK GKVE+RAD++GIVH+ FGKA F EDLLVNL A
Sbjct: 133 RGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKA 190
Score = 41.6 bits (96), Expect(2) = 4e-23
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = -2
Query: 470 PSGAKGVYWKSAHICSAMGPSVRLNIRDMLDYRL 369
PSGAKG YW+S ++ + MGPS++++I + + +L
Sbjct: 200 PSGAKGRYWRSVYVAATMGPSIQVDINALRELKL 233
>ref|NP_053948.1| ribosomal protein L1 [Porphyra purpurea]
gi|1710416|sp|P51338|RK1_PORPU CHLOROPLAST 50S RIBOSOMAL
PROTEIN L1 gi|2147041|pir||S73259 ribosomal protein L1,
chloroplast - red alga (Porphyra purpurea) chloroplast
gi|1276804|gb|AAC08224.1| 50S ribosomal protein L1
[Porphyra purpurea]
Length = 229
Score = 90.5 bits (223), Expect(2) = 5e-23
Identities = 40/56 (71%), Positives = 50/56 (88%)
Frame = -1
Query: 753 RGLMPNPKAGTVTAXIPQAISEFKQGKVEYRADKTGIVHLPFGKADFPEEDLLVNL 586
RGLMP+PKAGTVT I ++I+EFK GKVEYR D+TGI+H+PFGK+ FPEEDL++NL
Sbjct: 133 RGLMPSPKAGTVTLDITKSINEFKGGKVEYRVDRTGIIHVPFGKSSFPEEDLVMNL 188
Score = 39.7 bits (91), Expect(2) = 5e-23
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -2
Query: 470 PSGAKGVYWKSAHICSAMGPSVRLNIRDML 381
PSG+KG YWK+ + S MGPS++++I +L
Sbjct: 200 PSGSKGKYWKTFFLSSTMGPSIQIDITSLL 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,480,132
Number of Sequences: 1393205
Number of extensions: 12531152
Number of successful extensions: 32461
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 31672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32452
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
SPD042b03_f |
BP047315 |
1 |
552 |
| 2 |
SPD006b05_f |
BP044449 |
32 |
577 |
| 3 |
MWM028f08_f |
AV765090 |
66 |
196 |
| 4 |
GNf009f11 |
BP068034 |
68 |
484 |
| 5 |
MPD078e04_f |
AV775124 |
110 |
562 |
| 6 |
MFB035g04_f |
BP036594 |
122 |
463 |
| 7 |
MFB061g12_f |
BP038461 |
124 |
621 |
| 8 |
SPD038e01_f |
BP047023 |
125 |
569 |
| 9 |
GENf053f05 |
BP060617 |
138 |
613 |
| 10 |
GNf008d01 |
BP067947 |
165 |
597 |
| 11 |
SPD098a08_f |
BP051798 |
169 |
714 |
| 12 |
MF008h04_f |
BP028663 |
176 |
487 |
| 13 |
GNf050e06 |
BP071075 |
177 |
483 |
| 14 |
MFB050h04_f |
BP037657 |
187 |
717 |
| 15 |
MFB053c11_f |
BP037832 |
194 |
717 |
| 16 |
SPD016h08_f |
BP045298 |
198 |
519 |
| 17 |
MFB078h02_f |
BP039731 |
200 |
715 |
| 18 |
MF072e04_f |
BP032124 |
203 |
643 |
| 19 |
SPD076c10_f |
BP050067 |
209 |
758 |
| 20 |
SPD002d09_f |
BP044160 |
220 |
704 |
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Lotus japonicus
Kazusa DNA Research Institute