Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002309A_C01 KMC002309A_c01
(704 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174096.1| hypothetical protein; protein id: At1g27750.1 [... 79 6e-14
gb|AAF24949.1|AC012375_12 T22C5.20 [Arabidopsis thaliana] 61 2e-13
gb|AAF16768.1|AC010155_21 F3M18.7 [Arabidopsis thaliana] 34 2.3
ref|NP_564310.1| syntaxin SYP6 family; protein id: At1g28490.1, ... 32 8.6
gb|AAL59937.1| unknown protein [Arabidopsis thaliana] 32 8.6
>ref|NP_174096.1| hypothetical protein; protein id: At1g27750.1 [Arabidopsis thaliana]
Length = 1975
Score = 79.0 bits (193), Expect = 6e-14
Identities = 37/61 (60%), Positives = 46/61 (74%)
Frame = -1
Query: 530 LKLKPKELWKPVAVDTSWYEVLDSFLQFRSRWYDFLHCGVKGIVEGVIVGELEVTSGIWP 351
LKL P++ W+ VA D S ++ LDSFLQFRSRWYDF GVKGIV GVIVGELE+ ++
Sbjct: 1231 LKLNPRDFWREVASDASLHDFLDSFLQFRSRWYDFPFHGVKGIVAGVIVGELELCRRVFM 1290
Query: 350 I 348
+
Sbjct: 1291 V 1291
Score = 37.0 bits (84), Expect = 0.27
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Frame = -2
Query: 589 LDPIESQRVVDLLNSELSPFSS*NPRNYGNQ---------WLLTLLGMRF-WIAFCNSGA 440
LDP+ESQ VVDLLN EL+ NPR++ + +L + L R W F G
Sbjct: 1211 LDPVESQGVVDLLNRELTRLLKLNPRDFWREVASDASLHDFLDSFLQFRSRWYDFPFHGV 1270
Query: 439 GGMIS-FTVGSKGLLRALLLASLR 371
G+++ VG L R + + R
Sbjct: 1271 KGIVAGVIVGELELCRRVFMVLYR 1294
>gb|AAF24949.1|AC012375_12 T22C5.20 [Arabidopsis thaliana]
Length = 1840
Score = 60.8 bits (146), Expect(2) = 2e-13
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = -1
Query: 530 LKLKPKELWKPVAVDTSWYEVLDSFLQFRSRWYDFLHCGVKGIVEGVIVGELEVTS 363
LKL P++ W+ VA D S ++ LDSFLQFRSRWYDF GVK G+ V +L + S
Sbjct: 1163 LKLNPRDFWREVASDASLHDFLDSFLQFRSRWYDFPFHGVKDRPIGIPVLKLLIAS 1218
Score = 36.6 bits (83), Expect(2) = 2e-13
Identities = 17/28 (60%), Positives = 21/28 (74%)
Frame = -2
Query: 589 LDPIESQRVVDLLNSELSPFSS*NPRNY 506
LDP+ESQ VVDLLN EL+ NPR++
Sbjct: 1143 LDPVESQGVVDLLNRELTRLLKLNPRDF 1170
>gb|AAF16768.1|AC010155_21 F3M18.7 [Arabidopsis thaliana]
Length = 241
Score = 33.9 bits (76), Expect = 2.3
Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 8/77 (10%)
Frame = -1
Query: 566 SC*SPEFRVVSFLKL-----KPKELWKPVAV---DTSWYEVLDSFLQFRSRWYDFLHCGV 411
+C S E++V+ F K EL K + V D SWY + ++ L+ R RW V
Sbjct: 58 TCGSIEWQVLVFSHAVFTDRKVDELEKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQV 117
Query: 410 KGIVEGVIVGELEVTSG 360
+ + GV+ G++ +G
Sbjct: 118 RNVKSGVLAGKVSSGAG 134
>ref|NP_564310.1| syntaxin SYP6 family; protein id: At1g28490.1, supported by cDNA:
gi_16041649, supported by cDNA: gi_18175839 [Arabidopsis
thaliana] gi|28380156|sp|Q946Y7|SY61_ARATH Syntaxin 61
(AtSYP61) (Osmotic stess-sensitive mutant 1)
gi|16041650|gb|AAK40222.2|AF355754_1 syntaxin of plants
61 [Arabidopsis thaliana] gi|23297416|gb|AAN12965.1|
unknown protein [Arabidopsis thaliana]
Length = 245
Score = 32.0 bits (71), Expect = 8.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -1
Query: 512 ELWKPVAV---DTSWYEVLDSFLQFRSRWYDFLHCGVKGIVEGVIVGELEVTSG 360
EL K + V D SWY + ++ L+ R RW V+ + GV+ G++ +G
Sbjct: 59 ELEKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSSGAG 112
>gb|AAL59937.1| unknown protein [Arabidopsis thaliana]
Length = 245
Score = 32.0 bits (71), Expect = 8.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -1
Query: 512 ELWKPVAV---DTSWYEVLDSFLQFRSRWYDFLHCGVKGIVEGVIVGELEVTSG 360
EL K + V D SWY + ++ L+ R RW V+ + GV+ G++ +G
Sbjct: 59 ELEKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSSGAG 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 629,354,865
Number of Sequences: 1393205
Number of extensions: 13856879
Number of successful extensions: 33728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33712
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
