Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002308A_C01 KMC002308A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL27521.1|AF440206_1 defect in organelle trafficking protein... 32 3.1
gb|AAF32513.1|AF095234_1 defect in organelle trafficking protein... 32 5.2
pir||S61388 dotA protein - Legionella pneumophila gi|563803|gb|A... 32 5.2
gb|AAL27522.1|AF440207_1 defect in organelle trafficking protein... 32 5.2
gb|AAL27530.1|AF440215_1 defect in organelle trafficking protein... 32 5.2
>gb|AAL27521.1|AF440206_1 defect in organelle trafficking protein [Legionella pneumophila]
Length = 391
Score = 32.3 bits (72), Expect = 3.1
Identities = 27/86 (31%), Positives = 43/86 (49%), Gaps = 8/86 (9%)
Frame = +1
Query: 163 RVQRYKINLLNPTTENINKGLLMSLDAPSTLGESGIGWN*LS--------PRLESKAQIV 318
+V+ I+ LN T ++ NKGL+ A S S +G N L+ RL I
Sbjct: 142 KVKWNNISALNSTNQSDNKGLVTVGGAGSN---SSMGANSLNITSSQLQTARLSRAIAIQ 198
Query: 319 RFYLQLEWLAEICMNNELL*SSPTST 396
+ Y+ L +A++ +NN+ S+ TST
Sbjct: 199 QMYVTLSTVAQVMVNNDPAFSTTTST 224
>gb|AAF32513.1|AF095234_1 defect in organelle trafficking protein [Legionella pneumophila]
Length = 1048
Score = 31.6 bits (70), Expect = 5.2
Identities = 26/80 (32%), Positives = 40/80 (49%), Gaps = 8/80 (10%)
Frame = +1
Query: 181 INLLNPTTENINKGLLMSLDAPSTLGESGIGWN*LS--------PRLESKAQIVRFYLQL 336
I+ LN T ++ NKGL+ A S S +G N L+ RL I + Y+ L
Sbjct: 287 ISALNSTNQSDNKGLVTVGGAGSN---SSMGANSLNITSSQLQTARLSRAIAIQQMYVTL 343
Query: 337 EWLAEICMNNELL*SSPTST 396
+A++ +NN+ S+ TST
Sbjct: 344 STVAQVMVNNDPAFSTTTST 363
>pir||S61388 dotA protein - Legionella pneumophila gi|563803|gb|AAA79902.1| DotA
Length = 1048
Score = 31.6 bits (70), Expect = 5.2
Identities = 26/80 (32%), Positives = 40/80 (49%), Gaps = 8/80 (10%)
Frame = +1
Query: 181 INLLNPTTENINKGLLMSLDAPSTLGESGIGWN*LS--------PRLESKAQIVRFYLQL 336
I+ LN T ++ NKGL+ A S S +G N L+ RL I + Y+ L
Sbjct: 287 ISALNSTNQSDNKGLVTVGGAGSN---SSMGANSLNITSSQLQTARLSRAIAIQQMYVTL 343
Query: 337 EWLAEICMNNELL*SSPTST 396
+A++ +NN+ S+ TST
Sbjct: 344 STVAQVMVNNDPAFSTTTST 363
>gb|AAL27522.1|AF440207_1 defect in organelle trafficking protein [Legionella pneumophila]
Length = 444
Score = 31.6 bits (70), Expect = 5.2
Identities = 26/80 (32%), Positives = 40/80 (49%), Gaps = 8/80 (10%)
Frame = +1
Query: 181 INLLNPTTENINKGLLMSLDAPSTLGESGIGWN*LS--------PRLESKAQIVRFYLQL 336
I+ LN T ++ NKGL+ A S S +G N L+ RL I + Y+ L
Sbjct: 181 ISALNSTNQSDNKGLVTVGGAGSN---SSMGANSLNITSSQLQTARLSRAIAIQQMYVTL 237
Query: 337 EWLAEICMNNELL*SSPTST 396
+A++ +NN+ S+ TST
Sbjct: 238 STVAQVMVNNDPAFSTTTST 257
>gb|AAL27530.1|AF440215_1 defect in organelle trafficking protein [Legionella pneumophila]
Length = 391
Score = 31.6 bits (70), Expect = 5.2
Identities = 26/80 (32%), Positives = 40/80 (49%), Gaps = 8/80 (10%)
Frame = +1
Query: 181 INLLNPTTENINKGLLMSLDAPSTLGESGIGWN*LS--------PRLESKAQIVRFYLQL 336
I+ LN T ++ NKGL+ A S S +G N L+ RL I + Y+ L
Sbjct: 148 ISALNSTNQSDNKGLVTVGGAGSN---SSMGANSLNITSSQLQTARLSRAIAIQQMYVTL 204
Query: 337 EWLAEICMNNELL*SSPTST 396
+A++ +NN+ S+ TST
Sbjct: 205 STVAQVMVNNDPAFSTTTST 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,822,422
Number of Sequences: 1393205
Number of extensions: 8155781
Number of successful extensions: 14469
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14466
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
