Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002305A_C02 KMC002305A_c02
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC49014.1| ubiquitin 245 3e-64
gb|AAA34124.1| pentameric polyubiquitin 243 8e-64
gb|AAA34123.1| hexameric polyubiquitin gi|870792|gb|AAA68878.1| ... 243 8e-64
gb|AAM64530.1| ubiquitin homolog [Arabidopsis thaliana] 243 8e-64
ref|NP_567286.1| polyubiquitin UBQ11; protein id: At4g05050.1, s... 243 8e-64
>gb|AAC49014.1| ubiquitin
Length = 381
Score = 245 bits (625), Expect = 3e-64
Identities = 125/126 (99%), Positives = 125/126 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 256 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 315
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375
Query: 167 RLRGGY 150
RLRGGY
Sbjct: 376 RLRGGY 381
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 180 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 239
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299
Query: 167 RLRGG 153
RLRGG
Sbjct: 300 RLRGG 304
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 87
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147
Query: 167 RLRGG 153
RLRGG
Sbjct: 148 RLRGG 152
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 104 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 163
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223
Query: 167 RLRGG 153
RLRGG
Sbjct: 224 RLRGG 228
Score = 146 bits (369), Expect = 1e-34
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = -3
Query: 380 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 201
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 200 IQKESTLPLVLRLRGG 153
IQKESTL LVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gb|AAA34124.1| pentameric polyubiquitin
Length = 377
Score = 243 bits (621), Expect = 8e-64
Identities = 124/126 (98%), Positives = 125/126 (98%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 252 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 311
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 312 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 371
Query: 167 RLRGGY 150
RLRGG+
Sbjct: 372 RLRGGF 377
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 176 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 235
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 236 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 295
Query: 167 RLRGG 153
RLRGG
Sbjct: 296 RLRGG 300
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 24 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 83
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 84 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 143
Query: 167 RLRGG 153
RLRGG
Sbjct: 144 RLRGG 148
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 100 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 159
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 160 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 219
Query: 167 RLRGG 153
RLRGG
Sbjct: 220 RLRGG 224
Score = 139 bits (349), Expect = 3e-32
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = -3
Query: 368 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 189
VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE
Sbjct: 1 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 60
Query: 188 STLPLVLRLRGG 153
STL LVLRLRGG
Sbjct: 61 STLHLVLRLRGG 72
>gb|AAA34123.1| hexameric polyubiquitin gi|870792|gb|AAA68878.1| polyubiquitin
gi|4115333|gb|AAD03341.1| ubiquitin [Pisum sativum]
gi|4115335|gb|AAD03342.1| ubiquitin [Pisum sativum]
gi|22655101|gb|AAM98141.1| polyubiquitin UBQ10
[Arabidopsis thaliana]
Length = 457
Score = 243 bits (621), Expect = 8e-64
Identities = 124/126 (98%), Positives = 125/126 (98%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 332 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 391
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451
Query: 167 RLRGGY 150
RLRGG+
Sbjct: 452 RLRGGF 457
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 87
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147
Query: 167 RLRGG 153
RLRGG
Sbjct: 148 RLRGG 152
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 256 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 315
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375
Query: 167 RLRGG 153
RLRGG
Sbjct: 376 RLRGG 380
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 104 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 163
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223
Query: 167 RLRGG 153
RLRGG
Sbjct: 224 RLRGG 228
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 180 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 239
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299
Query: 167 RLRGG 153
RLRGG
Sbjct: 300 RLRGG 304
Score = 146 bits (369), Expect = 1e-34
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = -3
Query: 380 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 201
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 200 IQKESTLPLVLRLRGG 153
IQKESTL LVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gb|AAM64530.1| ubiquitin homolog [Arabidopsis thaliana]
Length = 229
Score = 243 bits (621), Expect = 8e-64
Identities = 124/126 (98%), Positives = 125/126 (98%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 104 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 163
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223
Query: 167 RLRGGY 150
RLRGG+
Sbjct: 224 RLRGGF 229
Score = 240 bits (612), Expect = 9e-63
Identities = 123/125 (98%), Positives = 123/125 (98%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL LRGGMQIFVKTLTGK
Sbjct: 28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLXLRGGMQIFVKTLTGK 87
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147
Query: 167 RLRGG 153
RLRGG
Sbjct: 148 RLRGG 152
Score = 144 bits (363), Expect = 6e-34
Identities = 74/76 (97%), Positives = 74/76 (97%)
Frame = -3
Query: 380 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 201
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 200 IQKESTLPLVLRLRGG 153
IQKESTL LVL LRGG
Sbjct: 61 IQKESTLHLVLXLRGG 76
>ref|NP_567286.1| polyubiquitin UBQ11; protein id: At4g05050.1, supported by cDNA:
3001., supported by cDNA: gi_15450586, supported by
cDNA: gi_15810025, supported by cDNA: gi_15982845,
supported by cDNA: gi_20466092 [Arabidopsis thaliana]
gi|25294252|pir||E85063 hypothetical protein AT4g05050
[imported] - Arabidopsis thaliana
gi|3882081|emb|CAA10056.1| polyubiquitin [Vicia faba]
gi|5732081|gb|AAD48980.1|AF162444_12 contains similarity
to Pfam family PF00240 - Ubiquitin family; score=526.5,
E=1.9e-154, N=3 [Arabidopsis thaliana]
gi|7267264|emb|CAB81047.1| contains similarity to Pfam
family PF00240 - Ubiquitin family, score=526.5,
E=1.9e-154, N=3~strong similarity to~Contains Ubiquitin
domain signature and profile AA27-52;Ubiquitin domain
signature and profile AA103-128;Ubiquitin domain
signature and profile AA179-204~contains EST gb:H36020,
H37363, R90359, N38245, AA042302, T75754, H76028,
H37311, N65705, T14154, R90281, T46759, AA712144,
R65063, T46210, Z29165, N96940, T76344, N37376, T04792,
R65348, AA597581, T75892, T43210, N96459, AA712611,
T45149, T45> gi|12583569|emb|CAC27335.1| putative
polyubiquitin [Picea abies] gi|15450587|gb|AAK96565.1|
AT4g05050/T32N4_13 [Arabidopsis thaliana]
gi|15810026|gb|AAL06940.1| AT4g05050/T32N4_13
[Arabidopsis thaliana] gi|15982846|gb|AAL09770.1|
AT4g05050/T32N4_13 [Arabidopsis thaliana]
gi|20466093|gb|AAM19968.1| AT4g05050/T32N4_13
[Arabidopsis thaliana] gi|24899675|gb|AAN65052.1|
Unknown protein [Arabidopsis thaliana]
Length = 229
Score = 243 bits (621), Expect = 8e-64
Identities = 124/126 (98%), Positives = 125/126 (98%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 104 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 163
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223
Query: 167 RLRGGY 150
RLRGG+
Sbjct: 224 RLRGGF 229
Score = 242 bits (618), Expect = 2e-63
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 527 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 348
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 87
Query: 347 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLPLVL 168
TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL LVL
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147
Query: 167 RLRGG 153
RLRGG
Sbjct: 148 RLRGG 152
Score = 146 bits (369), Expect = 1e-34
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = -3
Query: 380 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 201
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 200 IQKESTLPLVLRLRGG 153
IQKESTL LVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,441,553
Number of Sequences: 1393205
Number of extensions: 12053891
Number of successful extensions: 35352
Number of sequences better than 10.0: 1039
Number of HSP's better than 10.0 without gapping: 30303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34926
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
