Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002304A_C02 KMC002304A_c02
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q35638|RAC1_PEA RAC-LIKE GTP BINDING PROTEIN RHO1 gi|477010|p... 242 4e-63
gb|AAM18135.1|AF498359_1 small G-protein ROP9 [Medicago truncatula] 240 2e-62
gb|AAM18134.1|AF498358_1 small G-protein ROP6 [Medicago truncatula] 239 2e-62
gb|AAK31299.1| Rac-like GTPase 1 [Nicotiana tabacum] 238 8e-62
sp|Q39435|RAC1_BETVU RAC-LIKE GTP BINDING PROTEIN RHO1 gi|974780... 238 8e-62
>sp|Q35638|RAC1_PEA RAC-LIKE GTP BINDING PROTEIN RHO1 gi|477010|pir||A47525 GTP-binding
protein Rho1Ps - garden pea gi|1263170|gb|AAA96980.1|
GTP-binding protein
Length = 197
Score = 242 bits (617), Expect = 4e-63
Identities = 120/123 (97%), Positives = 123/123 (99%)
Frame = -1
Query: 714 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFLDHPG 535
YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPG
Sbjct: 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPG 134
Query: 534 AVPITTAQGEELRKLINAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKQKKKKNKAQKAC 355
AVPITTAQGEELRKLINAPAYIECSSK+QQNVKAVFDAAIRVVLQPPKQKKKK+KAQKAC
Sbjct: 135 AVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKAC 194
Query: 354 SIL 346
SIL
Sbjct: 195 SIL 197
>gb|AAM18135.1|AF498359_1 small G-protein ROP9 [Medicago truncatula]
Length = 197
Score = 240 bits (612), Expect = 2e-62
Identities = 119/123 (96%), Positives = 122/123 (98%)
Frame = -1
Query: 714 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFLDHPG 535
YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF +DHPG
Sbjct: 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPG 134
Query: 534 AVPITTAQGEELRKLINAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKQKKKKNKAQKAC 355
AVPITTAQGEELRKLINAPAYIECSSK+Q+NVKAVFDAAIRVVLQPPKQKKKKNKAQKAC
Sbjct: 135 AVPITTAQGEELRKLINAPAYIECSSKSQENVKAVFDAAIRVVLQPPKQKKKKNKAQKAC 194
Query: 354 SIL 346
SIL
Sbjct: 195 SIL 197
>gb|AAM18134.1|AF498358_1 small G-protein ROP6 [Medicago truncatula]
Length = 197
Score = 239 bits (611), Expect = 2e-62
Identities = 119/123 (96%), Positives = 122/123 (98%)
Frame = -1
Query: 714 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFLDHPG 535
YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPG
Sbjct: 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPG 134
Query: 534 AVPITTAQGEELRKLINAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKQKKKKNKAQKAC 355
AVPITTAQGEELRKLINAPAYIECSSK+QQNVKAVFDAAIRVVLQPPKQKKKK+KA KAC
Sbjct: 135 AVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAPKAC 194
Query: 354 SIL 346
SIL
Sbjct: 195 SIL 197
>gb|AAK31299.1| Rac-like GTPase 1 [Nicotiana tabacum]
Length = 197
Score = 238 bits (606), Expect = 8e-62
Identities = 117/123 (95%), Positives = 120/123 (97%)
Frame = -1
Query: 714 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFLDHPG 535
YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFF+DHPG
Sbjct: 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPG 134
Query: 534 AVPITTAQGEELRKLINAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKQKKKKNKAQKAC 355
AVPITTAQGEELRK I APAYIECSSKTQQNVKAVFDAAI+VVLQPPKQKKKK KAQKAC
Sbjct: 135 AVPITTAQGEELRKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKGKAQKAC 194
Query: 354 SIL 346
SIL
Sbjct: 195 SIL 197
>sp|Q39435|RAC1_BETVU RAC-LIKE GTP BINDING PROTEIN RHO1 gi|974780|emb|CAA89050.1| small G
protein [Beta vulgaris]
Length = 197
Score = 238 bits (606), Expect = 8e-62
Identities = 117/123 (95%), Positives = 121/123 (98%)
Frame = -1
Query: 714 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFLDHPG 535
YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFF+DHPG
Sbjct: 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPG 134
Query: 534 AVPITTAQGEELRKLINAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKQKKKKNKAQKAC 355
AVPITTAQGEELRKLI APAYIECSSKTQQNVKAVFDAAI+VVLQPPK KKKK+KAQKAC
Sbjct: 135 AVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKTKKKKSKAQKAC 194
Query: 354 SIL 346
SIL
Sbjct: 195 SIL 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 620,938,172
Number of Sequences: 1393205
Number of extensions: 13740930
Number of successful extensions: 40872
Number of sequences better than 10.0: 1148
Number of HSP's better than 10.0 without gapping: 37291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40132
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
