Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002303A_C01 KMC002303A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193109.1| putative protein; protein id: At4g13730.1 [Arab... 186 3e-46
ref|NP_171975.1| hypothetical protein; protein id: At1g04830.1 [... 185 4e-46
gb|AAO42175.1| unknown protein [Arabidopsis thaliana] gi|2897312... 185 4e-46
pir||E86181 hypothetical protein [imported] - Arabidopsis thalia... 147 2e-36
dbj|BAB92570.1| P0497A05.14 [Oryza sativa (japonica cultivar-gro... 137 1e-31
>ref|NP_193109.1| putative protein; protein id: At4g13730.1 [Arabidopsis thaliana]
gi|7485689|pir||T05242 hypothetical protein F18A5.120 -
Arabidopsis thaliana gi|4455302|emb|CAB36837.1| putative
protein [Arabidopsis thaliana]
gi|7268077|emb|CAB78415.1| putative protein [Arabidopsis
thaliana]
Length = 449
Score = 186 bits (472), Expect = 3e-46
Identities = 94/134 (70%), Positives = 105/134 (78%), Gaps = 2/134 (1%)
Frame = -2
Query: 678 LSGFRDNFVQQLDNSPVGIRATITRLSQLLKEHDEELWRHLEITSKVNPQFYAFRWITLL 499
+SGFRDNF QQLDNS VGIR TITRLS LLK HDEELWRHLE+T+K+NPQFYAFRWITLL
Sbjct: 314 MSGFRDNFCQQLDNSVVGIRYTITRLSLLLKHHDEELWRHLEVTTKINPQFYAFRWITLL 373
Query: 498 LTQEFNFADSIHIWDTILSDPRGSTGDSSPGYAVQC*F*FV--SASLPGDFTSNLKLLQN 325
LTQEFNF +S+HIWDT+LSDP G + C + L GDFTSNLKLLQN
Sbjct: 374 LTQEFNFVESLHIWDTLLSDPE---GPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQN 430
Query: 324 YPTTNISHLLYVAN 283
YP TNISH+LYVA+
Sbjct: 431 YPPTNISHMLYVAD 444
>ref|NP_171975.1| hypothetical protein; protein id: At1g04830.1 [Arabidopsis
thaliana]
Length = 451
Score = 185 bits (470), Expect = 4e-46
Identities = 95/143 (66%), Positives = 113/143 (78%)
Frame = -2
Query: 678 LSGFRDNFVQQLDNSPVGIRATITRLSQLLKEHDEELWRHLEITSKVNPQFYAFRWITLL 499
LSGFRD + QQLDNS VGIR+ ITRLSQL+++HDEELWRHLEIT+KVNPQFYAFRWITLL
Sbjct: 313 LSGFRDFYCQQLDNSVVGIRSAITRLSQLVRKHDEELWRHLEITTKVNPQFYAFRWITLL 372
Query: 498 LTQEFNFADSIHIWDTILSDPRGSTGDSSPGYAVQC*F*FVSASLPGDFTSNLKLLQNYP 319
LTQEF+F DS+HIWD +LSDP G +S G + GDFTSN+KLLQ+YP
Sbjct: 373 LTQEFSFFDSLHIWDALLSDPEGPL-ESLLGICCAMLVLVRRRLIAGDFTSNMKLLQHYP 431
Query: 318 TTNISHLLYVANTRFRVQSTLMV 250
TTNISHLLYVAN +++S ++V
Sbjct: 432 TTNISHLLYVAN---KLRSKMLV 451
>gb|AAO42175.1| unknown protein [Arabidopsis thaliana] gi|28973127|gb|AAO63888.1|
unknown protein [Arabidopsis thaliana]
Length = 448
Score = 185 bits (470), Expect = 4e-46
Identities = 95/143 (66%), Positives = 113/143 (78%)
Frame = -2
Query: 678 LSGFRDNFVQQLDNSPVGIRATITRLSQLLKEHDEELWRHLEITSKVNPQFYAFRWITLL 499
LSGFRD + QQLDNS VGIR+ ITRLSQL+++HDEELWRHLEIT+KVNPQFYAFRWITLL
Sbjct: 310 LSGFRDFYCQQLDNSVVGIRSAITRLSQLVRKHDEELWRHLEITTKVNPQFYAFRWITLL 369
Query: 498 LTQEFNFADSIHIWDTILSDPRGSTGDSSPGYAVQC*F*FVSASLPGDFTSNLKLLQNYP 319
LTQEF+F DS+HIWD +LSDP G +S G + GDFTSN+KLLQ+YP
Sbjct: 370 LTQEFSFFDSLHIWDALLSDPEGPL-ESLLGICCAMLVLVRRRLIAGDFTSNMKLLQHYP 428
Query: 318 TTNISHLLYVANTRFRVQSTLMV 250
TTNISHLLYVAN +++S ++V
Sbjct: 429 TTNISHLLYVAN---KLRSKMLV 448
>pir||E86181 hypothetical protein [imported] - Arabidopsis thaliana
gi|7211982|gb|AAF40453.1|AC004809_11 Similar to
gi|3217452 F45E6.3 gene product from C. elegans cosmid
gb|Z68117. [Arabidopsis thaliana]
Length = 438
Score = 147 bits (370), Expect(2) = 2e-36
Identities = 70/89 (78%), Positives = 79/89 (88%), Gaps = 2/89 (2%)
Frame = -2
Query: 678 LSGFRDNFVQQLDNSPVGIRATITRLSQLLKEHDEELWRHLEITSKVNPQFYAFRWITLL 499
LSGFRD + QQLDNS VGIR+ ITRLSQL+++HDEELWRHLEIT+KVNPQFYAFRWITLL
Sbjct: 310 LSGFRDFYCQQLDNSVVGIRSAITRLSQLVRKHDEELWRHLEITTKVNPQFYAFRWITLL 369
Query: 498 LTQEFNFADSIHIWDTILSDPRGS--TGD 418
LTQEF+F DS+HIWD +LSDP G TGD
Sbjct: 370 LTQEFSFFDSLHIWDALLSDPEGPLLTGD 398
Score = 28.1 bits (61), Expect(2) = 2e-36
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 355 FHF*FEVAAKLSHYKH*SFALCCQ 284
FH +EV + LS+YKH S +C Q
Sbjct: 415 FHVEYEVTSTLSNYKHQSSLVCSQ 438
>dbj|BAB92570.1| P0497A05.14 [Oryza sativa (japonica cultivar-group)]
gi|20804924|dbj|BAB92603.1| P0456E05.2 [Oryza sativa
(japonica cultivar-group)]
Length = 426
Score = 137 bits (346), Expect = 1e-31
Identities = 64/88 (72%), Positives = 78/88 (87%)
Frame = -2
Query: 678 LSGFRDNFVQQLDNSPVGIRATITRLSQLLKEHDEELWRHLEITSKVNPQFYAFRWITLL 499
LSGFRDNF Q+LDNS VGI+ T+++LSQL+ ++D EL R+LEIT+++NPQFYAFRWITLL
Sbjct: 230 LSGFRDNFCQKLDNSAVGIQGTLSKLSQLVAKYDGELQRYLEITTEINPQFYAFRWITLL 289
Query: 498 LTQEFNFADSIHIWDTILSDPRGSTGDS 415
LTQEFNFAD+IHIWDT+LSDP G G S
Sbjct: 290 LTQEFNFADTIHIWDTLLSDPDGPQGRS 317
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,223,581
Number of Sequences: 1393205
Number of extensions: 10483637
Number of successful extensions: 26077
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 25348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26015
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
