Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002302A_C01 KMC002302A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_470866.1| similar to unknown proteins [Listeria innocua] ... 32 2.9
ref|NP_465020.1| similar to unknown proteins [Listeria monocytog... 32 3.8
sp|P40982|YOR5_CALSR Hypothetical 23.9 kDa protein in XYNA 3'reg... 32 3.8
ref|NP_348813.1| Uncharacterized conserved protein [Clostridium ... 32 3.8
ref|NP_704518.1| hypothetical protein [Plasmodium falciparum 3D7... 31 6.5
>ref|NP_470866.1| similar to unknown proteins [Listeria innocua]
gi|25380884|pir||AI1623 hypothetical protein homolog
lin1530 [imported] - Listeria innocua (strain Clip11262)
gi|16414003|emb|CAC96761.1| similar to unknown proteins
[Listeria innocua]
Length = 210
Score = 32.3 bits (72), Expect = 2.9
Identities = 22/61 (36%), Positives = 36/61 (58%)
Frame = +1
Query: 157 KKAL*EGKQSKQGN*LHLWTKKIDTYVHLHKQI*VITLMIIGAGEFLIFANCSEAIQLKN 336
K+ L EG +S+Q TK+ T + L+ I V++L+IIG+ F++F S+ Q +N
Sbjct: 13 KQNLVEGSRSRQN------TKRKKTNLVLNLLIIVVSLLIIGSLYFVLFKTESDPTQQEN 66
Query: 337 K 339
K
Sbjct: 67 K 67
>ref|NP_465020.1| similar to unknown proteins [Listeria monocytogenes EGD-e]
gi|25380882|pir||AG1261 hypothetical protein lmo1495
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16410924|emb|CAC99573.1| similar to unknown proteins
[Listeria monocytogenes]
Length = 207
Score = 32.0 bits (71), Expect = 3.8
Identities = 22/61 (36%), Positives = 36/61 (58%)
Frame = +1
Query: 157 KKAL*EGKQSKQGN*LHLWTKKIDTYVHLHKQI*VITLMIIGAGEFLIFANCSEAIQLKN 336
K+ L EG +S+Q TK+ T + L+ I V++L+IIG+ F++F S+ Q +N
Sbjct: 13 KQNLVEGSRSQQN------TKRKKTNLVLNVLIIVVSLLIIGSLYFVLFKTESDPAQQEN 66
Query: 337 K 339
K
Sbjct: 67 K 67
>sp|P40982|YOR5_CALSR Hypothetical 23.9 kDa protein in XYNA 3'region (ORF5)
gi|632084|pir||S41789 hypothetical protein 5 -
thermophilic bacterium RT8.B4 gi|311190|gb|AAB42045.1|
ORF5 [Caldicellulosiruptor sp. Rt8B.4]
Length = 203
Score = 32.0 bits (71), Expect = 3.8
Identities = 22/79 (27%), Positives = 36/79 (44%), Gaps = 12/79 (15%)
Frame = +3
Query: 87 YIIVFSPQFQLGKNTR------HLNKCLKKESTLRRKAE*TRKLITPLDKKDRYIRAFTQ 248
Y SPQF+ R HLN+ L+K +++ K E L + +DK ++ +
Sbjct: 114 YFFFTSPQFKSAFAERGFICQRHLNQVLEKTASVSAKRELLSVLESKIDKILNHLERIKE 173
Query: 249 TN------IGYNSDDYRSW 287
N I Y +D+ R+W
Sbjct: 174 KNDYRNIHINYTADEIRAW 192
>ref|NP_348813.1| Uncharacterized conserved protein [Clostridium acetobutylicum]
gi|25499883|pir||F97170 uncharacterized conserved
protein CAC2196 [imported] - Clostridium acetobutylicum
gi|15025191|gb|AAK80153.1|AE007719_10 Uncharacterized
conserved protein [Clostridium acetobutylicum]
Length = 544
Score = 32.0 bits (71), Expect = 3.8
Identities = 22/67 (32%), Positives = 36/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 23 IINDRYPCSVSSILQNQNRNPIHYSVFPPIS--IGEEYKTPKQMLKKRKHFEKESRVNKE 196
++ D + S+SSIL+ + I+Y VFP + G+E K ++L +H+ S NK
Sbjct: 126 LLKDEFFVSLSSILKENEVSEINYIVFPNYNRIYGDELKYCTEIL---QHYIDISLSNKG 182
Query: 197 TNYTFGQ 217
TN F +
Sbjct: 183 TNEKFSK 189
>ref|NP_704518.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499257|emb|CAD51337.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2245
Score = 31.2 bits (69), Expect = 6.5
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +2
Query: 128 YKTPKQMLKKRKHFEKESRVNKETNYTFGQKR*IHTCIYTNK 253
+KT K+ KK K EKE +K NY++ + IH +TNK
Sbjct: 1150 FKTKKKKKKKEKEKEKEYYNHKHKNYSYQTNKYIHN--HTNK 1189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,239,092
Number of Sequences: 1393205
Number of extensions: 8064391
Number of successful extensions: 21151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21124
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
