Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002300A_C01 KMC002300A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98161.1| RAB1D [Lotus japonicus] 138 9e-35
emb|CAA98162.1| RAB1E [Lotus japonicus] 137 1e-33
dbj|BAA02117.1| GTP-binding protein [Pisum sativum] gi|738941|pr... 124 6e-30
gb|AAB97115.1| small GTP-binding protein [Glycine max] 120 3e-28
pir||S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fav... 115 6e-28
>emb|CAA98161.1| RAB1D [Lotus japonicus]
Length = 203
Score = 138 bits (348), Expect(2) = 9e-35
Identities = 69/72 (95%), Positives = 69/72 (95%)
Frame = -1
Query: 492 KCDLTANRAVSYDTAKEFADPIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANN 313
KCDLTANRAVSYDTAKEFAD IGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANN
Sbjct: 122 KCDLTANRAVSYDTAKEFADQIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANN 181
Query: 312 GRPPPVPIRGQP 277
GRPP V IRGQP
Sbjct: 182 GRPPTVQIRGQP 193
Score = 29.6 bits (65), Expect(2) = 9e-35
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -2
Query: 293 QSEDSPVGQKSGCCSS 246
Q PVGQKSGCCSS
Sbjct: 188 QIRGQPVGQKSGCCSS 203
>emb|CAA98162.1| RAB1E [Lotus japonicus]
Length = 203
Score = 137 bits (344), Expect(2) = 1e-33
Identities = 68/72 (94%), Positives = 68/72 (94%)
Frame = -1
Query: 492 KCDLTANRAVSYDTAKEFADPIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANN 313
KCDLTANRAVSYDTAKEFAD IGIPFMETSAKDATNVEQAFM MSASIKNRMASQPSANN
Sbjct: 122 KCDLTANRAVSYDTAKEFADQIGIPFMETSAKDATNVEQAFMGMSASIKNRMASQPSANN 181
Query: 312 GRPPPVPIRGQP 277
GRPP V IRGQP
Sbjct: 182 GRPPTVQIRGQP 193
Score = 27.3 bits (59), Expect(2) = 1e-33
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 293 QSEDSPVGQKSGCCSS 246
Q PVG KSGCCSS
Sbjct: 188 QIRGQPVGPKSGCCSS 203
>dbj|BAA02117.1| GTP-binding protein [Pisum sativum] gi|738941|prf||2001457J
GTP-binding protein
Length = 203
Score = 124 bits (310), Expect(2) = 6e-30
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -1
Query: 492 KCDLTANRAVSYDTAKEFADPIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANN 313
K DLTANR VSYDTAKEFAD IGIPFMETSAKDATNVE AFMAM+A+IK+RMASQPSANN
Sbjct: 122 KSDLTANRVVSYDTAKEFADQIGIPFMETSAKDATNVEGAFMAMAAAIKDRMASQPSANN 181
Query: 312 GRPPPVPIRGQP 277
RPP V IRGQP
Sbjct: 182 ARPPTVQIRGQP 193
Score = 28.1 bits (61), Expect(2) = 6e-30
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 293 QSEDSPVGQKSGCCSS 246
Q PVGQK GCCSS
Sbjct: 188 QIRGQPVGQKGGCCSS 203
>gb|AAB97115.1| small GTP-binding protein [Glycine max]
Length = 202
Score = 120 bits (301), Expect(2) = 3e-28
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -1
Query: 492 KCDLTANRAVSYDTAKEFADPIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANN 313
KCDL ANRAVSY+TAK FAD IGIPFMETSAKDATNVEQAFMAM+ASIK+RMASQP ANN
Sbjct: 122 KCDLEANRAVSYETAKAFADGIGIPFMETSAKDATNVEQAFMAMTASIKDRMASQP-ANN 180
Query: 312 GRPPPVPIRGQP 277
RPP V IRGQP
Sbjct: 181 ARPPTVQIRGQP 192
Score = 25.8 bits (55), Expect(2) = 3e-28
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 293 QSEDSPVGQKSGCCSS 246
Q PV QK GCCSS
Sbjct: 187 QIRGQPVAQKGGCCSS 202
>pir||S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean
gi|303734|dbj|BAA02118.1| GTP-binding protein [Pisum
sativum] gi|452359|emb|CAA82707.1| guanine nucleotide
regulatory protein [Vicia faba] gi|738942|prf||2001457K
GTP-binding protein gi|1098293|prf||2115367A small
GTP-binding protein
Length = 202
Score = 115 bits (288), Expect(2) = 6e-28
Identities = 58/72 (80%), Positives = 63/72 (86%)
Frame = -1
Query: 492 KCDLTANRAVSYDTAKEFADPIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANN 313
KCDLT NRAV Y+TAK FAD IGIPFMETSAKD+TNVEQAFMAM++SIK RMASQP+ NN
Sbjct: 122 KCDLTENRAVPYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKERMASQPT-NN 180
Query: 312 GRPPPVPIRGQP 277
RPP V IRGQP
Sbjct: 181 ARPPTVQIRGQP 192
Score = 29.6 bits (65), Expect(2) = 6e-28
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -2
Query: 293 QSEDSPVGQKSGCCSS 246
Q PVGQKSGCCSS
Sbjct: 187 QIRGQPVGQKSGCCSS 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,261,395
Number of Sequences: 1393205
Number of extensions: 10026564
Number of successful extensions: 29332
Number of sequences better than 10.0: 977
Number of HSP's better than 10.0 without gapping: 28282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29298
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
