Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002297A_C01 KMC002297A_c01
(774 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG59882.1|AF325901_1 seh1-like protein [Arabidopsis thaliana] 191 1e-47
ref|NP_564830.1| G-protein beta family; protein id: At1g64350.1,... 191 1e-47
gb|AAM65032.1| seh1-like protein [Arabidopsis thaliana] 191 1e-47
pir||E96667 unknown protein, 62092-56687 [imported] - Arabidopsi... 173 2e-42
dbj|BAB17174.1| P0407B12.11 [Oryza sativa (japonica cultivar-gro... 173 3e-42
>gb|AAG59882.1|AF325901_1 seh1-like protein [Arabidopsis thaliana]
Length = 326
Score = 191 bits (485), Expect = 1e-47
Identities = 84/112 (75%), Positives = 98/112 (87%)
Frame = -2
Query: 773 RWLPVAELAVAEDKGDQVYAVAWAPNIGRTYEIIAVATHKGLAIWHLGLNPDHDGRLPVE 594
RWL VAELA+ EDKGD VYA++WAPNIGR YE++AVATHKG+ IWH+GL PD +GRLPV+
Sbjct: 212 RWLAVAELALPEDKGDPVYALSWAPNIGRPYEVVAVATHKGIGIWHVGLAPDLEGRLPVK 271
Query: 593 RVAVLSGHDGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLNGVWHQQAAFEP 438
+V+ LSGH G VWQMEWDMSGMTLA+TG DGMV+LWQSNLNG WH+QA EP
Sbjct: 272 KVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLNGEWHEQATLEP 323
>ref|NP_564830.1| G-protein beta family; protein id: At1g64350.1, supported by cDNA:
35985., supported by cDNA: gi_13877918, supported by
cDNA: gi_16323455 [Arabidopsis thaliana]
gi|13877919|gb|AAK44037.1|AF370222_1 unknown protein
[Arabidopsis thaliana] gi|16323456|gb|AAL15222.1|
unknown protein [Arabidopsis thaliana]
Length = 326
Score = 191 bits (485), Expect = 1e-47
Identities = 84/112 (75%), Positives = 98/112 (87%)
Frame = -2
Query: 773 RWLPVAELAVAEDKGDQVYAVAWAPNIGRTYEIIAVATHKGLAIWHLGLNPDHDGRLPVE 594
RWL VAELA+ EDKGD VYA++WAPNIGR YE++AVATHKG+ IWH+GL PD +GRLPV+
Sbjct: 212 RWLAVAELALPEDKGDPVYALSWAPNIGRPYEVVAVATHKGIGIWHVGLAPDLEGRLPVK 271
Query: 593 RVAVLSGHDGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLNGVWHQQAAFEP 438
+V+ LSGH G VWQMEWDMSGMTLA+TG DGMV+LWQSNLNG WH+QA EP
Sbjct: 272 KVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLNGEWHEQATLEP 323
>gb|AAM65032.1| seh1-like protein [Arabidopsis thaliana]
Length = 326
Score = 191 bits (485), Expect = 1e-47
Identities = 84/112 (75%), Positives = 98/112 (87%)
Frame = -2
Query: 773 RWLPVAELAVAEDKGDQVYAVAWAPNIGRTYEIIAVATHKGLAIWHLGLNPDHDGRLPVE 594
RWL VAELA+ EDKGD VYA++WAPNIGR YE++AVATHKG+ IWH+GL PD +GRLPV+
Sbjct: 212 RWLAVAELALPEDKGDPVYALSWAPNIGRPYEVVAVATHKGIGIWHVGLAPDLEGRLPVK 271
Query: 593 RVAVLSGHDGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLNGVWHQQAAFEP 438
+V+ LSGH G VWQMEWDMSGMTLA+TG DGMV+LWQSNLNG WH+QA EP
Sbjct: 272 KVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLNGEWHEQATLEP 323
>pir||E96667 unknown protein, 62092-56687 [imported] - Arabidopsis thaliana
gi|12323471|gb|AAG51710.1|AC066689_9 unknown protein;
62092-56687 [Arabidopsis thaliana]
Length = 594
Score = 173 bits (439), Expect = 2e-42
Identities = 77/101 (76%), Positives = 90/101 (88%)
Frame = -2
Query: 773 RWLPVAELAVAEDKGDQVYAVAWAPNIGRTYEIIAVATHKGLAIWHLGLNPDHDGRLPVE 594
RWL VAELA+ EDKGD VYA++WAPNIGR YE++AVATHKG+ IWH+GL PD +GRLPV+
Sbjct: 212 RWLAVAELALPEDKGDPVYALSWAPNIGRPYEVVAVATHKGIGIWHVGLAPDLEGRLPVK 271
Query: 593 RVAVLSGHDGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLN 471
+V+ LSGH G VWQMEWDMSGMTLA+TG DGMV+LWQSNLN
Sbjct: 272 KVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLN 312
>dbj|BAB17174.1| P0407B12.11 [Oryza sativa (japonica cultivar-group)]
Length = 306
Score = 173 bits (438), Expect = 3e-42
Identities = 79/111 (71%), Positives = 92/111 (82%)
Frame = -2
Query: 773 RWLPVAELAVAEDKGDQVYAVAWAPNIGRTYEIIAVATHKGLAIWHLGLNPDHDGRLPVE 594
RWLP+ EL +DKGD V+AVAWAPNIGR YEIIAVAT KG+AIWH+GL+ + DG L E
Sbjct: 191 RWLPLVELGSPQDKGDIVHAVAWAPNIGRPYEIIAVATCKGIAIWHIGLSAESDGSLSTE 250
Query: 593 RVAVLSGHDGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLNGVWHQQAAFE 441
VAVLSGHDG V Q+EWDM GMTLA+TG DGMV+LWQ+NLNGVWH+QA +
Sbjct: 251 NVAVLSGHDGEVLQLEWDMGGMTLASTGGDGMVKLWQANLNGVWHEQAVLD 301
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 690,260,847
Number of Sequences: 1393205
Number of extensions: 15416697
Number of successful extensions: 40651
Number of sequences better than 10.0: 421
Number of HSP's better than 10.0 without gapping: 36686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40501
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
