Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002295A_C01 KMC002295A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190779.1| putative protein; protein id: At3g52110.1 [Arab... 55 7e-08
emb|CAA11332.1| hypothetical protein [Catharanthus roseus] 34 1.7
ref|NP_702557.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.7
ref|XP_153449.1| hypothetical protein XP_153449 [Mus musculus] 33 2.2
ref|NP_074933.1| orf313 [Podospora anserina] gi|482970|pir||B388... 33 3.8
>ref|NP_190779.1| putative protein; protein id: At3g52110.1 [Arabidopsis thaliana]
gi|11288829|pir||T49090 hypothetical protein F4F15.220 -
Arabidopsis thaliana gi|4678940|emb|CAB41331.1| putative
protein [Arabidopsis thaliana]
Length = 362
Score = 54.7 bits (130), Expect(2) = 7e-08
Identities = 35/75 (46%), Positives = 43/75 (56%), Gaps = 1/75 (1%)
Frame = -2
Query: 609 ENRPITLDLECIKNKREEN-LQQIRVNPPSPQCFSAAHGLNKTTPSTTLKSRLMEKGILK 433
EN P+ L LE IKNK E LQQIR NPPSPQCFS N+T L+++ E K
Sbjct: 272 ENIPVPLKLETIKNKGHERFLQQIRTNPPSPQCFSE----NRTATLKPLRTKPTEVLKRK 327
Query: 432 EVEPNKEIAKESSPS 388
E E +E ++S S
Sbjct: 328 EDEAEEEKNRKSGES 342
Score = 23.5 bits (49), Expect(2) = 7e-08
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = -1
Query: 346 TKTLDMFWFLKP 311
T+ LD+ WFLKP
Sbjct: 346 TRGLDVLWFLKP 357
>emb|CAA11332.1| hypothetical protein [Catharanthus roseus]
Length = 277
Score = 33.9 bits (76), Expect = 1.7
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = +2
Query: 359 NYWQWLLQLYEGDDSFAISLFGSTSLSIPFSI 454
++W+WL + +GD SF +S G TSL I +
Sbjct: 45 SFWEWLAGIIDGDGSFQVSKKGYTSLEITMGL 76
>ref|NP_702557.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497743|gb|AAN37281.1|AE014827_24 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2381
Score = 33.9 bits (76), Expect = 1.7
Identities = 13/41 (31%), Positives = 24/41 (57%)
Frame = -2
Query: 261 LSFVFYVMLSCIKPNYFFLRLKSFFIIVAILYSFMLPYPCT 139
+ F++ V + IK FL LK +FI++ + ++PY C+
Sbjct: 1257 IEFIYEVFFNIIKKKNNFLHLKGYFILLCFVNDTIIPYVCS 1297
>ref|XP_153449.1| hypothetical protein XP_153449 [Mus musculus]
Length = 442
Score = 33.5 bits (75), Expect = 2.2
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 267 IYNHLAPGSACTVCQGFKNQNMSKVLVSLSSITGNGFC 380
I H + CTVCQG Q++S + S S +TGN FC
Sbjct: 163 IAKHQEEATGCTVCQG-AAQSLSPEIGSHSPVTGNRFC 199
>ref|NP_074933.1| orf313 [Podospora anserina] gi|482970|pir||B38888 COI intron 9
protein - Podospora anserina mitochondrion
gi|1334542|emb|CAA38787.1| Dod COI i9 grp IB protein
[Podospora anserina]
Length = 313
Score = 32.7 bits (73), Expect = 3.8
Identities = 22/83 (26%), Positives = 40/83 (47%)
Frame = +2
Query: 356 INYWQWLLQLYEGDDSFAISLFGSTSLSIPFSISRDFKVVEGVVLLSP*AAEKH*GEGGF 535
+ + +WL L +GD F +S G SL I I RD + ++ V + GG
Sbjct: 81 LKFKEWLAGLIDGDGCFQLSKKGYASLEITMDI-RDERALQAVKNI----------YGGS 129
Query: 536 TRICCKFSSLLFFIHSRSRVIGL 604
++ S+L + +HS+ +++ L
Sbjct: 130 IKLRSGVSALRYRLHSKKKLVDL 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,791,528
Number of Sequences: 1393205
Number of extensions: 10728330
Number of successful extensions: 28224
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 27402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28214
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
