Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002291A_C01 KMC002291A_c01
(374 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172401.1| hypothetical protein; protein id: At1g09300.1 [... 34 0.52
dbj|BAC42121.1| unknown protein [Arabidopsis thaliana] 33 0.68
ref|XP_231499.1| similar to Pyruvate kinase, M1 isozyme (Pyruvat... 33 0.89
ref|XP_161984.1| hypothetical protein XP_161984 [Mus musculus] 32 1.5
sp|P48161|RL2A_EUPCR 60S RIBOSOMAL PROTEIN L27A (L29) 31 4.4
>ref|NP_172401.1| hypothetical protein; protein id: At1g09300.1 [Arabidopsis
thaliana] gi|25289694|pir||A86226 hypothetical protein
[imported] - Arabidopsis thaliana
gi|4337174|gb|AAD18095.1| Similar to gi|1573829 HI0816
aminopeptidase P homolog (pepP) from Haemophilus
influenzae genome gb|U32764. [Arabidopsis thaliana]
Length = 451
Score = 33.9 bits (76), Expect = 0.52
Identities = 22/67 (32%), Positives = 36/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 34 SISH--GVEVYHEKTMTNIRSYYRGFCPNLQMYSVYIPTTNEKSQKFQGDPPKIIDSVVI 207
SI H G++V+ + R GF ++ VYIP++ + ++FQG +I D V+I
Sbjct: 338 SIGHYLGMDVHDSSAVGYDRPLQPGFVITIEP-GVYIPSSFDCPERFQGIGIRIEDDVLI 396
Query: 208 EDTNYSV 228
+T Y V
Sbjct: 397 TETGYEV 403
>dbj|BAC42121.1| unknown protein [Arabidopsis thaliana]
Length = 480
Score = 33.5 bits (75), Expect = 0.68
Identities = 22/67 (32%), Positives = 36/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 34 SISH--GVEVYHEKTMTNIRSYYRGFCPNLQMYSVYIPTTNEKSQKFQGDPPKIIDSVVI 207
SI H G++V+ + R GF ++ VYIP++ + ++FQG +I D V+I
Sbjct: 380 SIGHYLGMDVHDSSAVGYGRPLQPGFVITIEP-GVYIPSSFDCPERFQGIGIRIEDDVLI 438
Query: 208 EDTNYSV 228
+T Y V
Sbjct: 439 TETGYEV 445
>ref|XP_231499.1| similar to Pyruvate kinase, M1 isozyme (Pyruvate kinase muscle
isozyme) [Rattus norvegicus]
Length = 315
Score = 33.1 bits (74), Expect = 0.89
Identities = 18/67 (26%), Positives = 33/67 (48%), Gaps = 1/67 (1%)
Frame = +1
Query: 31 ISISHGVEVYHEKTMTNIRSYYRGFCPNLQMYSVYIPTTNEKSQKFQGDPPKI-IDSVVI 207
++ SHG YH +T+ N+R+ F +L +Y + E G PKI +D+ +
Sbjct: 53 LNFSHGTSEYHAETIKNVRAATESFASDLMLYGPVLVELKE------GATPKITLDNAYM 106
Query: 208 EDTNYSV 228
E + ++
Sbjct: 107 EKCDENI 113
>ref|XP_161984.1| hypothetical protein XP_161984 [Mus musculus]
Length = 115
Score = 32.3 bits (72), Expect = 1.5
Identities = 14/36 (38%), Positives = 22/36 (60%), Gaps = 2/36 (5%)
Frame = +1
Query: 37 ISHGVEVYHEKTM--TNIRSYYRGFCPNLQMYSVYI 138
I HG++VYHE+ + N R Y PN Q++S+ +
Sbjct: 74 IDHGLQVYHERFLGHQNARGYNLTVSPNAQLWSILV 109
>sp|P48161|RL2A_EUPCR 60S RIBOSOMAL PROTEIN L27A (L29)
Length = 148
Score = 30.8 bits (68), Expect = 4.4
Identities = 22/72 (30%), Positives = 36/72 (49%)
Frame = +1
Query: 13 YM*GHIISISHGVEVYHEKTMTNIRSYYRGFCPNLQMYSVYIPTTNEKSQKFQGDPPKII 192
Y GHI HG+ +H +R+ Y +CP++ + ++ T E+ QK Q D K+I
Sbjct: 48 YHPGHIGK--HGMRHFHL-----MRNQY--YCPSINLSKLWSLVTEEERQKAQTDKSKVI 98
Query: 193 DSVVIEDTNYSV 228
V++ Y V
Sbjct: 99 LIDVVKHGYYKV 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,810,972
Number of Sequences: 1393205
Number of extensions: 6555270
Number of successful extensions: 15594
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15593
length of database: 448,689,247
effective HSP length: 100
effective length of database: 309,368,747
effective search space used: 7424849928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
