Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002285A_C01 KMC002285A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_211712.1| hypothetical protein XP_211712 [Homo sapiens] 32 3.7
ref|NP_789050.1| putative integral membrane protein [Tropheryma ... 31 8.3
ref|NP_787221.1| unknown [Tropheryma whipplei str. Twist] gi|284... 31 8.3
>ref|XP_211712.1| hypothetical protein XP_211712 [Homo sapiens]
Length = 91
Score = 32.3 bits (72), Expect = 3.7
Identities = 14/44 (31%), Positives = 27/44 (60%), Gaps = 1/44 (2%)
Frame = -2
Query: 206 LYCI*VVILVYIRIFAYLRHTFCLYL-LFILLCFLML*HFAMFC 78
L I + + +YI ++ Y+R C+Y+ ++I + F +L +F FC
Sbjct: 17 LKTIYIYVYIYICVYIYIRVYMCVYIYVYIYMMFSILFYFCTFC 60
>ref|NP_789050.1| putative integral membrane protein [Tropheryma whipplei TW08/27]
gi|28410401|emb|CAD66787.1| putative integral membrane
protein [Tropheryma whipplei TW08/27]
Length = 347
Score = 31.2 bits (69), Expect = 8.3
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = -3
Query: 442 GICIMVTGCL*IYRMIMLKPAIYSFI 365
GIC+++ G + IYR+ +L P Y F+
Sbjct: 41 GICVLLYGTVLIYRLSLLAPVFYDFV 66
>ref|NP_787221.1| unknown [Tropheryma whipplei str. Twist] gi|28476100|gb|AAO44190.1|
unknown [Tropheryma whipplei str. Twist]
Length = 477
Score = 31.2 bits (69), Expect = 8.3
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = -3
Query: 442 GICIMVTGCL*IYRMIMLKPAIYSFI 365
GIC+++ G + IYR+ +L P Y F+
Sbjct: 41 GICVLLYGTVLIYRLSLLAPVFYDFV 66
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,160,125
Number of Sequences: 1393205
Number of extensions: 8155887
Number of successful extensions: 16389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16375
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
