Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002283A_C01 KMC002283A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175986.2| unknown protein; protein id: At1g55900.1, suppo... 74 1e-12
gb|AAF79316.1|AC002304_9 F14J16.15 [Arabidopsis thaliana] 62 7e-09
dbj|BAB61224.1| hypothetical protein [Oryza sativa (japonica cul... 53 2e-06
pir||T39693 hypothetical protein SPAC17A3.01c - fission yeast (... 47 2e-04
ref|NP_595583.1| conserved protein; similar to S. cerevisiae PRS... 47 2e-04
>ref|NP_175986.2| unknown protein; protein id: At1g55900.1, supported by cDNA:
gi_18175980 [Arabidopsis thaliana]
gi|18175981|gb|AAL59962.1| unknown protein [Arabidopsis
thaliana] gi|21689895|gb|AAM67508.1| unknown protein
[Arabidopsis thaliana]
Length = 376
Score = 74.3 bits (181), Expect = 1e-12
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = -1
Query: 574 ALLDFIPFLEFVARSSPADIRPVLQSYQGCDIPNEFIRRSKEHQRRMQEQKHRGRLWK 401
AL+D IPFLE+VAR+SPADIRPVL S++ DI EFI RS E+Q+R Q Q +GR W+
Sbjct: 318 ALVDLIPFLEYVARNSPADIRPVLASFERKDIAKEFIDRSIEYQKRKQGQLGQGRFWR 375
>gb|AAF79316.1|AC002304_9 F14J16.15 [Arabidopsis thaliana]
Length = 414
Score = 61.6 bits (148), Expect = 7e-09
Identities = 30/45 (66%), Positives = 37/45 (81%)
Frame = -1
Query: 574 ALLDFIPFLEFVARSSPADIRPVLQSYQGCDIPNEFIRRSKEHQR 440
AL+D IPFLE+VAR+SPADIRPVL S++ DI EFI RS E+Q+
Sbjct: 323 ALVDLIPFLEYVARNSPADIRPVLASFERKDIAKEFIDRSIEYQK 367
>dbj|BAB61224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|20804681|dbj|BAB92369.1| P0512C01.24 [Oryza sativa
(japonica cultivar-group)]
Length = 54
Score = 53.1 bits (126), Expect = 2e-06
Identities = 26/38 (68%), Positives = 29/38 (75%)
Frame = -1
Query: 553 FLEFVARSSPADIRPVLQSYQGCDIPNEFIRRSKEHQR 440
F + VA + P+DIR VL SYQG DIP EFI RSKEHQR
Sbjct: 17 FADNVAMARPSDIRAVLASYQGRDIPAEFIERSKEHQR 54
>pir||T39693 hypothetical protein SPAC17A3.01c - fission yeast
(Schizosaccharomyces pombe) gi|2257530|dbj|BAA21424.1|
hypothetical protein YPL063w [Schizosaccharomyces pombe]
gi|5679720|emb|CAB51760.1| conserved protein; similar to
S. cerevisiae PRS1; possible plasma membrane phosphatase
involved in sodium stress response [Schizosaccharomyces
pombe]
Length = 452
Score = 47.0 bits (110), Expect = 2e-04
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Frame = -1
Query: 571 LLDFIPFLEFVARSSPADIRPVLQSYQGCDIPNEFIRRSKEHQRRM----QEQKHRG 413
L+ IP LEF+A D+RPVL+SYQG +IP E+ RR ++ + ++ E+K +G
Sbjct: 306 LVGLIPLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKLRTKLIEDWNEKKKKG 362
>ref|NP_595583.1| conserved protein; similar to S. cerevisiae PRS1; possible plasma
membrane phosphatase involved in sodium stress response
[Schizosaccharomyces pombe] gi|2950508|emb|CAA17836.1|
conserved protein; similar to S. cerevisiae PSR1;
possible plasma membrane phosphatase involved in sodium
stress response [Schizosaccharomyces pombe]
Length = 215
Score = 47.0 bits (110), Expect = 2e-04
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Frame = -1
Query: 571 LLDFIPFLEFVARSSPADIRPVLQSYQGCDIPNEFIRRSKEHQRRM----QEQKHRG 413
L+ IP LEF+A D+RPVL+SYQG +IP E+ RR ++ + ++ E+K +G
Sbjct: 69 LVGLIPLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKLRTKLIEDWNEKKKKG 125
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,375,768
Number of Sequences: 1393205
Number of extensions: 8764920
Number of successful extensions: 27096
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 26641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27095
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
