Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002281A_C01 KMC002281A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194261.1| SRG1-like protein; protein id: At4g25310.1 [Ara... 127 1e-28
dbj|BAC42769.1| SRG1 like protein [Arabidopsis thaliana] 124 1e-27
ref|NP_173144.1| SRG1-like protein; protein id: At1g17010.1 [Ara... 124 1e-27
pir||G86305 SRG1 homolog [imported] - Arabidopsis thaliana gi|57... 124 1e-27
ref|NP_173145.1| SRG1-like protein; protein id: At1g17020.1, sup... 123 2e-27
>ref|NP_194261.1| SRG1-like protein; protein id: At4g25310.1 [Arabidopsis thaliana]
gi|7433186|pir||T05552 SRG1 protein-related protein
F24A6.150 - Arabidopsis thaliana
gi|4454019|emb|CAA23072.1| SRG1-like protein
[Arabidopsis thaliana] gi|7269382|emb|CAB81342.1|
SRG1-like protein [Arabidopsis thaliana]
Length = 353
Score = 127 bits (318), Expect = 1e-28
Identities = 61/106 (57%), Positives = 78/106 (73%)
Frame = -1
Query: 610 IRKDGKWVPVTPLSHAFVIHVGDIMEILTHGIYRSIEHRATINSEKERISLASFHRPLMN 431
I+KDGKWV V PL +A V++VGDI+EI+T+G YRSIEHR +NSEKER+S+ASFH
Sbjct: 248 IKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVASFHNTGFG 307
Query: 430 KVIGPTPSLVTPERPALFKTIAVEDFYRVFFSRQLKGKTLLNAMRI 293
K IGP SLV + ALFKT+ E+++ FSR+L GK L+ MRI
Sbjct: 308 KEIGPMRSLVERHKGALFKTLTTEEYFHGLFSRELDGKAYLDVMRI 353
>dbj|BAC42769.1| SRG1 like protein [Arabidopsis thaliana]
Length = 361
Score = 124 bits (311), Expect = 1e-27
Identities = 58/109 (53%), Positives = 82/109 (75%)
Frame = -1
Query: 610 IRKDGKWVPVTPLSHAFVIHVGDIMEILTHGIYRSIEHRATINSEKERISLASFHRPLMN 431
I+K+GKW V PL +AF+++VGD++EI+T+G YRSIEHRA +N EKER+S+A+FH M+
Sbjct: 253 IKKNGKWFFVKPLQNAFIVNVGDVLEIITNGTYRSIEHRAMVNLEKERLSIATFHNTGMD 312
Query: 430 KVIGPTPSLVTPERPALFKTIAVEDFYRVFFSRQLKGKTLLNAMRIENE 284
K IGP SLV + A F+++ +D+ FSR+LKGK L+AMRIE +
Sbjct: 313 KEIGPARSLVQRQEAAKFRSLKTKDYLNGLFSRELKGKAYLDAMRIEGK 361
>ref|NP_173144.1| SRG1-like protein; protein id: At1g17010.1 [Arabidopsis thaliana]
Length = 361
Score = 124 bits (311), Expect = 1e-27
Identities = 58/109 (53%), Positives = 82/109 (75%)
Frame = -1
Query: 610 IRKDGKWVPVTPLSHAFVIHVGDIMEILTHGIYRSIEHRATINSEKERISLASFHRPLMN 431
I+K+GKW V PL +AF+++VGD++EI+T+G YRSIEHRA +N EKER+S+A+FH M+
Sbjct: 253 IKKNGKWFFVKPLQNAFIVNVGDVLEIITNGTYRSIEHRAMVNLEKERLSIATFHNTGMD 312
Query: 430 KVIGPTPSLVTPERPALFKTIAVEDFYRVFFSRQLKGKTLLNAMRIENE 284
K IGP SLV + A F+++ +D+ FSR+LKGK L+AMRIE +
Sbjct: 313 KEIGPARSLVQRQEAAKFRSLKTKDYLNGLFSRELKGKAYLDAMRIEGK 361
>pir||G86305 SRG1 homolog [imported] - Arabidopsis thaliana
gi|5734769|gb|AAD50034.1|AC007651_29 Very similar to
SRG1 [Arabidopsis thaliana]
Length = 346
Score = 124 bits (311), Expect = 1e-27
Identities = 58/109 (53%), Positives = 82/109 (75%)
Frame = -1
Query: 610 IRKDGKWVPVTPLSHAFVIHVGDIMEILTHGIYRSIEHRATINSEKERISLASFHRPLMN 431
I+K+GKW V PL +AF+++VGD++EI+T+G YRSIEHRA +N EKER+S+A+FH M+
Sbjct: 238 IKKNGKWFFVKPLQNAFIVNVGDVLEIITNGTYRSIEHRAMVNLEKERLSIATFHNTGMD 297
Query: 430 KVIGPTPSLVTPERPALFKTIAVEDFYRVFFSRQLKGKTLLNAMRIENE 284
K IGP SLV + A F+++ +D+ FSR+LKGK L+AMRIE +
Sbjct: 298 KEIGPARSLVQRQEAAKFRSLKTKDYLNGLFSRELKGKAYLDAMRIEGK 346
>ref|NP_173145.1| SRG1-like protein; protein id: At1g17020.1, supported by cDNA:
gi_15081818 [Arabidopsis thaliana] gi|629561|pir||S44261
SRG1 protein - Arabidopsis thaliana
gi|479047|emb|CAA55654.1| SRG1 [Arabidopsis thaliana]
gi|5734767|gb|AAD50032.1|AC007651_27 SRG1 Protein
[Arabidopsis thaliana] gi|15081819|gb|AAK82564.1|
F6I1.30/F6I1.30 [Arabidopsis thaliana]
gi|22655018|gb|AAM98100.1| At1g17020/F6I1.30
[Arabidopsis thaliana]
Length = 358
Score = 123 bits (308), Expect = 2e-27
Identities = 56/106 (52%), Positives = 80/106 (74%)
Frame = -1
Query: 610 IRKDGKWVPVTPLSHAFVIHVGDIMEILTHGIYRSIEHRATINSEKERISLASFHRPLMN 431
I+KDGKWVPV PL +AF++++GD++EI+T+G YRSIEHR +NSEKER+S+A+FH M
Sbjct: 253 IKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMY 312
Query: 430 KVIGPTPSLVTPERPALFKTIAVEDFYRVFFSRQLKGKTLLNAMRI 293
K +GP SLV ++ A FK + ++++ FSR L GK L+A+RI
Sbjct: 313 KEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,417,677
Number of Sequences: 1393205
Number of extensions: 12073319
Number of successful extensions: 24200
Number of sequences better than 10.0: 596
Number of HSP's better than 10.0 without gapping: 23648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24148
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
