Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002280A_C01 KMC002280A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567666.1| Expressed protein; protein id: At4g22740.1, sup... 40 0.013
gb|AAM63274.1| unknown [Arabidopsis thaliana] 38 0.062
ref|XP_216008.1| hypothetical protein XP_216008 [Rattus norvegicus] 34 1.2
ref|NP_057271.1| bridging integrator 2; bridging integrator-2; b... 33 2.0
gb|AAH47686.1| bridging integrator 2 [Homo sapiens] 33 2.0
>ref|NP_567666.1| Expressed protein; protein id: At4g22740.1, supported by cDNA:
20948., supported by cDNA: gi_15809949, supported by
cDNA: gi_19347919 [Arabidopsis thaliana]
gi|15809950|gb|AAL06902.1| AT4g22740/T12H17_130
[Arabidopsis thaliana] gi|19347920|gb|AAL85981.1|
unknown protein [Arabidopsis thaliana]
gi|21436279|gb|AAM51278.1| unknown protein [Arabidopsis
thaliana]
Length = 356
Score = 40.4 bits (93), Expect = 0.013
Identities = 29/68 (42%), Positives = 34/68 (49%), Gaps = 4/68 (5%)
Frame = -2
Query: 522 NLNEDELVGFEEEWKG--KGQKYLPGWVGSIGADHSGQAQQARQGGWMLPS--PEHSHPG 355
NLNEDEL GFE+ W G + Q LP GS G SG R+ +LPS P SH
Sbjct: 283 NLNEDELAGFEQSWSGNARRQMQLPSRSGSFG---SGLVN--REQPMLLPSTDPSPSHAR 337
Query: 354 GSTEARGK 331
+ R K
Sbjct: 338 AESSRRPK 345
>gb|AAM63274.1| unknown [Arabidopsis thaliana]
Length = 356
Score = 38.1 bits (87), Expect = 0.062
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Frame = -2
Query: 522 NLNEDELVGFEEEWKG--KGQKYLPGWVGSIGADHSGQAQQARQGGWML-----PSPEHS 364
NLNEDEL GFE+ W G + Q LP GS G+ + Q ML PSP H+
Sbjct: 283 NLNEDELAGFEQSWSGNARRQMQLPSRSGSFGSGLVNREQP------MLLPXTDPSPSHA 336
Query: 363 HPGGS 349
S
Sbjct: 337 RAESS 341
>ref|XP_216008.1| hypothetical protein XP_216008 [Rattus norvegicus]
Length = 140
Score = 33.9 bits (76), Expect = 1.2
Identities = 12/29 (41%), Positives = 14/29 (47%)
Frame = -1
Query: 247 LRHHCCCLALSSCCLLSVFLPCFPIMCMV 161
+ HHCCC SCC F C C+V
Sbjct: 111 IAHHCCCCPCCSCCHCPRFCRCHSCCCVV 139
>ref|NP_057271.1| bridging integrator 2; bridging integrator-2; breast cancer
associated protein BRAP1 [Homo sapiens]
gi|5852834|gb|AAD54227.1|AF146531_1 bridging
integrator-2 [Homo sapiens]
Length = 564
Score = 33.1 bits (74), Expect = 2.0
Identities = 19/68 (27%), Positives = 33/68 (47%)
Frame = -2
Query: 459 LPGWVGSIGADHSGQAQQARQGGWMLPSPEHSHPGGSTEARGKVGSSPSQERIRTDSRDK 280
LP G A S ++A+ +LPS PGG+ G+ SS ++ +RT + +
Sbjct: 336 LPACNGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASE 395
Query: 279 GLYHPREQ 256
G P+++
Sbjct: 396 GSEQPKKR 403
>gb|AAH47686.1| bridging integrator 2 [Homo sapiens]
Length = 565
Score = 33.1 bits (74), Expect = 2.0
Identities = 19/68 (27%), Positives = 33/68 (47%)
Frame = -2
Query: 459 LPGWVGSIGADHSGQAQQARQGGWMLPSPEHSHPGGSTEARGKVGSSPSQERIRTDSRDK 280
LP G A S ++A+ +LPS PGG+ G+ SS ++ +RT + +
Sbjct: 337 LPACNGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASE 396
Query: 279 GLYHPREQ 256
G P+++
Sbjct: 397 GSEQPKKR 404
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,741,360
Number of Sequences: 1393205
Number of extensions: 10656652
Number of successful extensions: 33970
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 32355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33817
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
