Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002279A_C01 KMC002279A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM76763.1| hypothetical protein [Arabidopsis thaliana] 156 2e-37
ref|NP_181648.1| hypothetical protein; protein id: At2g41150.1 [... 156 2e-37
ref|NP_191234.1| putative protein; protein id: At3g56750.1, supp... 154 1e-36
dbj|BAC16471.1| hypothetical protein~similar to Arabidopsis thal... 147 8e-35
ref|NP_457565.1| SufI protein [Salmonella enterica subsp. enteri... 35 0.77
>gb|AAM76763.1| hypothetical protein [Arabidopsis thaliana]
Length = 401
Score = 156 bits (394), Expect = 2e-37
Identities = 75/106 (70%), Positives = 91/106 (85%)
Frame = -1
Query: 613 FILCRIAKWVPPGRTLFIASNERTPGFFSPLSVRYRLAYSSNYSHMLDPIVENHYPLFMI 434
FI+ RI K +PPGRTLFI SNERTP FFSPL++RY++AYSSN+S +LDPI+EN+Y LFM+
Sbjct: 293 FIIGRIQKQIPPGRTLFIGSNERTPDFFSPLAIRYKVAYSSNFSEILDPIIENNYQLFMV 352
Query: 433 ERLIMMGAQTFIRTFKEDETDLSLTDDPKKNTKKWQIPELVYNADE 296
ERLIMMGA+TF +TF+E ETDL+LTDDPKKN K W+IP VY DE
Sbjct: 353 ERLIMMGAKTFFKTFREYETDLTLTDDPKKN-KNWEIP--VYTMDE 395
>ref|NP_181648.1| hypothetical protein; protein id: At2g41150.1 [Arabidopsis
thaliana] gi|7487634|pir||T02104 hypothetical protein
At2g41150 [imported] - Arabidopsis thaliana
gi|3402703|gb|AAD11997.1| hypothetical protein
[Arabidopsis thaliana]
Length = 401
Score = 156 bits (394), Expect = 2e-37
Identities = 75/106 (70%), Positives = 91/106 (85%)
Frame = -1
Query: 613 FILCRIAKWVPPGRTLFIASNERTPGFFSPLSVRYRLAYSSNYSHMLDPIVENHYPLFMI 434
FI+ RI K +PPGRTLFI SNERTP FFSPL++RY++AYSSN+S +LDPI+EN+Y LFM+
Sbjct: 293 FIIGRIQKQIPPGRTLFIGSNERTPDFFSPLAIRYKVAYSSNFSEILDPIIENNYQLFMV 352
Query: 433 ERLIMMGAQTFIRTFKEDETDLSLTDDPKKNTKKWQIPELVYNADE 296
ERLIMMGA+TF +TF+E ETDL+LTDDPKKN K W+IP VY DE
Sbjct: 353 ERLIMMGAKTFFKTFREYETDLTLTDDPKKN-KNWEIP--VYTMDE 395
>ref|NP_191234.1| putative protein; protein id: At3g56750.1, supported by cDNA:
gi_16648896, supported by cDNA: gi_20453218 [Arabidopsis
thaliana] gi|11290635|pir||T51263 hypothetical protein
T8M16_80 - Arabidopsis thaliana
gi|9662994|emb|CAC00738.1| putative protein [Arabidopsis
thaliana] gi|16648897|gb|AAL24300.1| putative protein
[Arabidopsis thaliana] gi|20453219|gb|AAM19848.1|
AT3g56750/T8M16_80 [Arabidopsis thaliana]
gi|23197686|gb|AAN15370.1| putative protein [Arabidopsis
thaliana]
Length = 403
Score = 154 bits (388), Expect = 1e-36
Identities = 76/106 (71%), Positives = 90/106 (84%)
Frame = -1
Query: 613 FILCRIAKWVPPGRTLFIASNERTPGFFSPLSVRYRLAYSSNYSHMLDPIVENHYPLFMI 434
FIL RI K +P GRTLFI SNER PGFFSPL+VRY+LAYSSN+S +LDPI+EN+Y LFM+
Sbjct: 295 FILRRIEKRIPRGRTLFIGSNERKPGFFSPLAVRYKLAYSSNFSEILDPIIENNYQLFMM 354
Query: 433 ERLIMMGAQTFIRTFKEDETDLSLTDDPKKNTKKWQIPELVYNADE 296
ERL+MMGA+T+ +TFKE ETDL+LTDDPKKN K W+IP VY DE
Sbjct: 355 ERLVMMGAKTYFKTFKEYETDLTLTDDPKKN-KNWEIP--VYTMDE 397
>dbj|BAC16471.1| hypothetical protein~similar to Arabidopsis thaliana chromosome
3,At3g56750 [Oryza sativa (japonica cultivar-group)]
gi|27261108|dbj|BAC45221.1| OJ1340_C08.38 [Oryza sativa
(japonica cultivar-group)]
Length = 397
Score = 147 bits (372), Expect = 8e-35
Identities = 69/98 (70%), Positives = 84/98 (85%)
Frame = -1
Query: 601 RIAKWVPPGRTLFIASNERTPGFFSPLSVRYRLAYSSNYSHMLDPIVENHYPLFMIERLI 422
RIAKW+P GRTLFIASNERTPGFFSPLS RY+LAYSSN+S +L+P+++N+Y LFM+ERLI
Sbjct: 299 RIAKWIPRGRTLFIASNERTPGFFSPLSDRYKLAYSSNFSSILEPVIDNNYQLFMVERLI 358
Query: 421 MMGAQTFIRTFKEDETDLSLTDDPKKNTKKWQIPELVY 308
M GA+ F++T KE + DLSL DDPKKNTK W+ E VY
Sbjct: 359 MQGARKFVKTMKEFDNDLSLCDDPKKNTKVWE--EAVY 394
>ref|NP_457565.1| SufI protein [Salmonella enterica subsp. enterica serovar Typhi]
gi|16766472|ref|NP_462087.1| suppressor of ftsI,
putative periplasmic protein [Salmonella typhimurium
LT2] gi|29143435|ref|NP_806777.1| SufI protein
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
gi|20141749|sp|P40799|SUFI_SALTY Protein sufI precursor
gi|25512331|pir||AD0888 SufI protein [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18) gi|16421727|gb|AAL22046.1| suppressor of
ftsI [Salmonella typhimurium LT2]
gi|16504250|emb|CAD03004.1| SufI protein [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29139069|gb|AAO70637.1| SufI protein [Salmonella
enterica subsp. enterica serovar Typhi Ty2]
Length = 470
Score = 35.0 bits (79), Expect = 0.77
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = -1
Query: 550 ERTPGFFSPLSVRYRLAYSSNYSHMLDPIVENHYPLFMIERLIMMGAQTFIRTFKEDETD 371
+R GFF P S+ + L P+V ++ P+ ++ IM GA R D
Sbjct: 303 DRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPTEIMSGAPVRSR-------D 355
Query: 370 LSLTDDPKKNTKKWQIPELVYNADE 296
+SL DDP N + W + + A +
Sbjct: 356 ISLGDDPGINGQLWDVNRIDITAQQ 380
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,844,784
Number of Sequences: 1393205
Number of extensions: 11230853
Number of successful extensions: 22245
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22239
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
