Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002277A_C01 KMC002277A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565834.1| E2, ubiquitin-conjugating enzyme, putative; pro... 85 7e-16
ref|NP_566968.1| E2, ubiquitin-conjugating enzyme, putative; pro... 84 2e-15
gb|AAC32114.1| CROC-1-like protein [Picea mariana] 82 8e-15
ref|NP_564191.1| E2, ubiquitin-conjugating enzyme, putative; pro... 70 3e-11
pir||G86366 protein F26F24.10 [imported] - Arabidopsis thaliana ... 70 3e-11
>ref|NP_565834.1| E2, ubiquitin-conjugating enzyme, putative; protein id:
At2g36060.1, supported by cDNA: 29951., supported by
cDNA: gi_17065367, supported by cDNA: gi_20260067
[Arabidopsis thaliana] gi|25326236|pir||D84776 probable
ubiquitin-conjugating enzyme [imported] - Arabidopsis
thaliana gi|4510363|gb|AAD21451.1| E2,
ubiquitin-conjugating enzyme, putative [Arabidopsis
thaliana] gi|17065368|gb|AAL32838.1| putative
ubiquitin-conjugating enzyme [Arabidopsis thaliana]
gi|20260068|gb|AAM13381.1| putative
ubiquitin-conjugating enzyme [Arabidopsis thaliana]
Length = 145
Score = 85.1 bits (209), Expect = 7e-16
Identities = 39/46 (84%), Positives = 43/46 (92%)
Frame = -2
Query: 559 VEPKKFVLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 422
V+ KKF +LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct: 100 VDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEGTFF 145
>ref|NP_566968.1| E2, ubiquitin-conjugating enzyme, putative; protein id:
At3g52560.1, supported by cDNA: 16125., supported by
cDNA: gi_14596116, supported by cDNA: gi_18377481
[Arabidopsis thaliana] gi|7449968|pir||T08443 probable
DNA-binding protein F22O6.60 - Arabidopsis thaliana
gi|4886271|emb|CAB43411.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|14596117|gb|AAK68786.1|
Unknown protein [Arabidopsis thaliana]
gi|18377482|gb|AAL66907.1| unknown protein [Arabidopsis
thaliana] gi|21553737|gb|AAM62830.1| E2,
ubiquitin-conjugating enzyme, putative [Arabidopsis
thaliana]
Length = 146
Score = 84.0 bits (206), Expect = 2e-15
Identities = 39/46 (84%), Positives = 41/46 (88%)
Frame = -2
Query: 559 VEPKKFVLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 422
V+PKKF LLANWQREYTMEDIL QLKKEM+ HNRKLVQPPEGT F
Sbjct: 101 VDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 146
>gb|AAC32114.1| CROC-1-like protein [Picea mariana]
Length = 140
Score = 81.6 bits (200), Expect = 8e-15
Identities = 36/47 (76%), Positives = 42/47 (88%)
Frame = -2
Query: 562 QVEPKKFVLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 422
+VEPK F +LANW+R+YTMEDILT LK+EM A HNRKLVQPPEGT+F
Sbjct: 94 RVEPKHFSMLANWRRDYTMEDILTHLKREMLASHNRKLVQPPEGTFF 140
>ref|NP_564191.1| E2, ubiquitin-conjugating enzyme, putative; protein id:
At1g23260.1, supported by cDNA: gi_16649052, supported
by cDNA: gi_20259983 [Arabidopsis thaliana]
gi|16649053|gb|AAL24378.1| similar to DNA binding
protein [Arabidopsis thaliana]
gi|20259984|gb|AAM13339.1| similar to DNA binding
protein [Arabidopsis thaliana]
Length = 158
Score = 69.7 bits (169), Expect = 3e-11
Identities = 31/43 (72%), Positives = 34/43 (78%)
Frame = -2
Query: 559 VEPKKFVLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 431
VEP F +L NW+REYTMEDIL +LKKEM HNRKL QPPEG
Sbjct: 99 VEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEG 141
>pir||G86366 protein F26F24.10 [imported] - Arabidopsis thaliana
gi|9295713|gb|AAF87019.1|AC005292_28 F26F24.10
[Arabidopsis thaliana]
Length = 171
Score = 69.7 bits (169), Expect = 3e-11
Identities = 31/43 (72%), Positives = 34/43 (78%)
Frame = -2
Query: 559 VEPKKFVLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 431
VEP F +L NW+REYTMEDIL +LKKEM HNRKL QPPEG
Sbjct: 112 VEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEG 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,524,005
Number of Sequences: 1393205
Number of extensions: 12167570
Number of successful extensions: 27681
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 26807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27676
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
