Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002274A_C01 KMC002274A_c01
(681 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05867 hypothetical protein T29A15.110 - Arabidopsis thalia... 164 1e-39
gb|AAM61004.1| unknown [Arabidopsis thaliana] 164 1e-39
ref|NP_567781.1| expressed protein; protein id: At4g27620.1, sup... 164 1e-39
gb|AAO22647.1| unknown protein [Arabidopsis thaliana] gi|2839404... 146 3e-34
ref|NP_194491.1| hypothetical protein; protein id: At4g27610.1 [... 146 3e-34
>pir||T05867 hypothetical protein T29A15.110 - Arabidopsis thaliana
gi|4469013|emb|CAB38274.1| hypothetical protein
[Arabidopsis thaliana] gi|7269616|emb|CAB81412.1|
hypothetical protein [Arabidopsis thaliana]
Length = 291
Score = 164 bits (414), Expect = 1e-39
Identities = 90/140 (64%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
Frame = -3
Query: 679 NSLNGQMGLSSHLQLQLDAANRDLFDAEREIQRLRKAIADPCVGQVPIDQSSTVTNWSSE 500
NSLN QMG SSH+Q QLDA NRDLF++ERE+QRLRKAIAD CVG + WS
Sbjct: 168 NSLNAQMGHSSHIQTQLDATNRDLFESEREVQRLRKAIADHCVGHTGSN------GWS-- 219
Query: 499 TRNGHSNGHLDGENNLEPPEK-VRDGEERVEMLKRQVGELKEVIEGKEYLLQSYKEQKTE 323
G ++ ENN E PE +RDGE R+EML+++VGELKEVI+GKEYLL+SYKEQKTE
Sbjct: 220 -------GDVNSENNYESPENGIRDGE-RIEMLRKEVGELKEVIDGKEYLLRSYKEQKTE 271
Query: 322 LSLKIRELQQRLDSQLPNIL 263
L K++ELQQRLDSQLPNIL
Sbjct: 272 LLQKVKELQQRLDSQLPNIL 291
>gb|AAM61004.1| unknown [Arabidopsis thaliana]
Length = 325
Score = 164 bits (414), Expect = 1e-39
Identities = 90/140 (64%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
Frame = -3
Query: 679 NSLNGQMGLSSHLQLQLDAANRDLFDAEREIQRLRKAIADPCVGQVPIDQSSTVTNWSSE 500
NSLN QMG SSH+Q QLDA NRDLF++ERE+QRLRKAIAD CVG + WS
Sbjct: 202 NSLNAQMGHSSHIQTQLDATNRDLFESEREVQRLRKAIADHCVGHTGSN------GWS-- 253
Query: 499 TRNGHSNGHLDGENNLEPPEK-VRDGEERVEMLKRQVGELKEVIEGKEYLLQSYKEQKTE 323
G ++ ENN E PE +RDGE R+EML+++VGELKEVI+GKEYLL+SYKEQKTE
Sbjct: 254 -------GDVNSENNYESPENGIRDGE-RIEMLRKEVGELKEVIDGKEYLLRSYKEQKTE 305
Query: 322 LSLKIRELQQRLDSQLPNIL 263
L K++ELQQRLDSQLPNIL
Sbjct: 306 LLQKVKELQQRLDSQLPNIL 325
>ref|NP_567781.1| expressed protein; protein id: At4g27620.1, supported by cDNA:
108168. [Arabidopsis thaliana]
Length = 325
Score = 164 bits (414), Expect = 1e-39
Identities = 90/140 (64%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
Frame = -3
Query: 679 NSLNGQMGLSSHLQLQLDAANRDLFDAEREIQRLRKAIADPCVGQVPIDQSSTVTNWSSE 500
NSLN QMG SSH+Q QLDA NRDLF++ERE+QRLRKAIAD CVG + WS
Sbjct: 202 NSLNAQMGHSSHIQTQLDATNRDLFESEREVQRLRKAIADHCVGHTGSN------GWS-- 253
Query: 499 TRNGHSNGHLDGENNLEPPEK-VRDGEERVEMLKRQVGELKEVIEGKEYLLQSYKEQKTE 323
G ++ ENN E PE +RDGE R+EML+++VGELKEVI+GKEYLL+SYKEQKTE
Sbjct: 254 -------GDVNSENNYESPENGIRDGE-RIEMLRKEVGELKEVIDGKEYLLRSYKEQKTE 305
Query: 322 LSLKIRELQQRLDSQLPNIL 263
L K++ELQQRLDSQLPNIL
Sbjct: 306 LLQKVKELQQRLDSQLPNIL 325
>gb|AAO22647.1| unknown protein [Arabidopsis thaliana] gi|28394043|gb|AAO42429.1|
unknown protein [Arabidopsis thaliana]
Length = 334
Score = 146 bits (368), Expect = 3e-34
Identities = 83/140 (59%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
Frame = -3
Query: 679 NSLNGQMGLSSHLQLQLDAANRDLFDAEREIQRLRKAIADPCVGQVPIDQSSTVTNWSSE 500
NS N Q SSHLQ QLD NRDLF++ERE+QRLRKAIAD VG +N +
Sbjct: 202 NSYNAQTAHSSHLQAQLDTLNRDLFESEREVQRLRKAIADHSVG------CGADSNGKTS 255
Query: 499 TRNGHSNGHLDGENNLEPPEK-VRDGEERVEMLKRQVGELKEVIEGKEYLLQSYKEQKTE 323
+ G +D E+N E EK +RDGE RVEML+++V ELKEVI+GKEYLL+SYKEQK E
Sbjct: 256 PVGPWNGGFMDSESNYESQEKSLRDGE-RVEMLRKEVSELKEVIDGKEYLLRSYKEQKIE 314
Query: 322 LSLKIRELQQRLDSQLPNIL 263
LS K++ELQQRLDSQL N+L
Sbjct: 315 LSQKVKELQQRLDSQLQNLL 334
>ref|NP_194491.1| hypothetical protein; protein id: At4g27610.1 [Arabidopsis
thaliana] gi|7487505|pir||T05866 hypothetical protein
T29A15.100 - Arabidopsis thaliana
gi|4469012|emb|CAB38273.1| hypothetical protein
[Arabidopsis thaliana] gi|7269615|emb|CAB81411.1|
hypothetical protein [Arabidopsis thaliana]
Length = 299
Score = 146 bits (368), Expect = 3e-34
Identities = 83/140 (59%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
Frame = -3
Query: 679 NSLNGQMGLSSHLQLQLDAANRDLFDAEREIQRLRKAIADPCVGQVPIDQSSTVTNWSSE 500
NS N Q SSHLQ QLD NRDLF++ERE+QRLRKAIAD VG +N +
Sbjct: 167 NSYNAQTAHSSHLQAQLDTLNRDLFESEREVQRLRKAIADHSVG------CGADSNGKTS 220
Query: 499 TRNGHSNGHLDGENNLEPPEK-VRDGEERVEMLKRQVGELKEVIEGKEYLLQSYKEQKTE 323
+ G +D E+N E EK +RDGE RVEML+++V ELKEVI+GKEYLL+SYKEQK E
Sbjct: 221 PVGPWNGGFMDSESNYESQEKSLRDGE-RVEMLRKEVSELKEVIDGKEYLLRSYKEQKIE 279
Query: 322 LSLKIRELQQRLDSQLPNIL 263
LS K++ELQQRLDSQL N+L
Sbjct: 280 LSQKVKELQQRLDSQLQNLL 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,802,708
Number of Sequences: 1393205
Number of extensions: 11271235
Number of successful extensions: 39879
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 37247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39762
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
