Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002272A_C01 KMC002272A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_569047.1| SKP1 interacting partner 2 (SKIP2); protein id:... 77 1e-13
ref|NP_567316.1| F-box protein family, AtFBL8/AtFBL24; protein i... 69 4e-11
ref|NP_175151.1| F-box protein family; protein id: At1g47056.1 [... 61 9e-09
ref|NP_566928.1| F-box protein family, AtFBL16; protein id: At3g... 60 2e-08
ref|NP_212487.1| B. burgdorferi predicted coding region BB0353 [... 37 0.23
>ref|NP_569047.1| SKP1 interacting partner 2 (SKIP2); protein id: At5g67250.1,
supported by cDNA: gi_10716948, supported by cDNA:
gi_15810226 [Arabidopsis thaliana]
gi|10716949|gb|AAG21977.1| SKP1 interacting partner 2
[Arabidopsis thaliana] gi|27311735|gb|AAO00833.1| SKP1
interacting partner 2 (SKIP2) [Arabidopsis thaliana]
Length = 527
Score = 77.4 bits (189), Expect = 1e-13
Identities = 43/110 (39%), Positives = 63/110 (57%)
Frame = -3
Query: 579 LKVRKCRKVTGEIVEWLREKRSSLAFNFDYSEVEPLDGNGSDGGARETTMAFPPMDTQVN 400
LKV+KC+ VTGEI +WLRE+R +L + D E E + G ET + P +
Sbjct: 422 LKVKKCKVVTGEIGDWLREQRRTLVVSMDGDETEAVV---VVDGEVETVVEEPRVAQAGG 478
Query: 399 LADDAPSSSNNNNNNRVSMFRTQFGFFVGRNFVPCAFRRWANIDSIPSSS 250
+ + SSN +R++M R++ GF GRN V C FRRW++ D+ SS+
Sbjct: 479 IVAEI-GSSNGGGGSRLAMIRSKLGFLAGRNLVTCTFRRWSHNDNASSST 527
>ref|NP_567316.1| F-box protein family, AtFBL8/AtFBL24; protein id: At4g07400.1
[Arabidopsis thaliana] gi|25407371|pir||B85072
hypothetical protein AT4g07400 [imported] - Arabidopsis
thaliana gi|5732048|gb|AAD48947.1|AF147262_10 contains
similarity to the Pfam family PF00646 - F-box domain;
score=10.1, E=1.2, N=1 [Arabidopsis thaliana]
gi|7267336|emb|CAB81110.1| contains similarity to the
Pfam family PF00646 - F-box domain, score=10.1, E=1.2,
N=1~similarity to [Arabidopsis thaliana]
Length = 554
Score = 68.9 bits (167), Expect = 4e-11
Identities = 38/99 (38%), Positives = 56/99 (56%)
Frame = -3
Query: 579 LKVRKCRKVTGEIVEWLREKRSSLAFNFDYSEVEPLDGNGSDGGARETTMAFPPMDTQVN 400
+KV+KCR VT + + LR++R+ L N D E ++G+ +GGA+E + FPP Q+
Sbjct: 451 VKVKKCRGVTTQGADLLRKRRALLVVNLDAPETPIVEGSVGEGGAQENAVEFPPSRLQIP 510
Query: 399 LADDAPSSSNNNNNNRVSMFRTQFGFFVGRNFVPCAFRR 283
A S+ +R S F+ + GF RNFV CA RR
Sbjct: 511 TIGLASGST-----SRSSSFKLRLGFLSQRNFVSCALRR 544
>ref|NP_175151.1| F-box protein family; protein id: At1g47056.1 [Arabidopsis
thaliana] gi|25405187|pir||D96512 hypothetical protein
F2G19.16 [imported] - Arabidopsis thaliana
gi|12321015|gb|AAG50633.1|AC083835_18 hypothetical
protein [Arabidopsis thaliana]
Length = 518
Score = 61.2 bits (147), Expect = 9e-09
Identities = 34/101 (33%), Positives = 54/101 (52%), Gaps = 2/101 (1%)
Frame = -3
Query: 579 LKVRKCRKVTGEIVEWLREKRSSLAFNFDYSEVEPLDGNGSD--GGARETTMAFPPMDTQ 406
+K++KC+ V G +WLR R L+ N D E E + +D GG++E + FP +++Q
Sbjct: 418 VKIKKCKGVLGGCADWLRTVRPMLSVNADTMEQEHEEAASNDVVGGSQENGIEFPQLNSQ 477
Query: 405 VNLADDAPSSSNNNNNNRVSMFRTQFGFFVGRNFVPCAFRR 283
+ + A SS NR F++ G F G + VPC R+
Sbjct: 478 IMASSIASSS-----RNRSGYFKSGIGLFSGMSLVPCTSRQ 513
>ref|NP_566928.1| F-box protein family, AtFBL16; protein id: At3g50080.1 [Arabidopsis
thaliana] gi|11357752|pir||T45861 hypothetical protein
F3A4.160 - Arabidopsis thaliana
gi|6522929|emb|CAB62116.1| putative protein [Arabidopsis
thaliana]
Length = 522
Score = 60.1 bits (144), Expect = 2e-08
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Frame = -3
Query: 579 LKVRKCRKVTGEIVEWLREKRSSLAFNFDYSEVEPLDGNG-SDGGARETTMAFPPMDTQV 403
LKV+KC VTGE+ EWLRE+R +L + D E +G G DGG + +
Sbjct: 416 LKVKKCSLVTGEVREWLRERRMTLVVSMDDDET---NGVGLVDGGDQRVLETVVEEEAPP 472
Query: 402 NLADDAPSSSNNNNNNRVSMFRTQFGFFVGRNFVPCAFRRWANIDSIPS 256
+ D +++ +T+ G GRN V C RRW+ ++ S
Sbjct: 473 VIDGDGGLGVAGGGRLGLAILKTKLGLLAGRNLVACTLRRWSQSEATSS 521
>ref|NP_212487.1| B. burgdorferi predicted coding region BB0353 [Borrelia
burgdorferi] gi|7463297|pir||H70143 hypothetical protein
BB0353 - Lyme disease spirochete
gi|2688260|gb|AAC66738.1| B. burgdorferi predicted
coding region BB0353 [Borrelia burgdorferi B31]
Length = 599
Score = 36.6 bits (83), Expect = 0.23
Identities = 43/167 (25%), Positives = 75/167 (44%)
Frame = -3
Query: 552 TGEIVEWLREKRSSLAFNFDYSEVEPLDGNGSDGGARETTMAFPPMDTQVNLADDAPSSS 373
TG ++ ++ ++L N Y + D S+ + ++ DT N+ + +
Sbjct: 400 TGNVILHIKIPFATLKGNSVYQNILDKDNEQSEITLTKVFVSTDSFDT--NVLEVVKINE 457
Query: 372 NNNNNNRVSMFRTQFGFFVGRNFVPCAFRRWANIDSIPSSSFS*SLVRMVIHYCHFSLYP 193
N N S F T+FGFF+ +P AF R A ++ ++FS SLV ++ P
Sbjct: 458 NVENLALFSNF-TEFGFFLKIQNLPSAFHRVAILNLKLINTFSLSLVLLI--------SP 508
Query: 192 MSSALVCSVACFLEDLLTEFCFPMGIIAVVVNVNYM*AITFIDLSCL 52
+S L + F L ++ F A++ V+ M AI F ++CL
Sbjct: 509 ISLVL---IGAFFISLFSKIEFNFNSKAMIFLVSLMIAI-FSGITCL 551
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,237,676
Number of Sequences: 1393205
Number of extensions: 11840824
Number of successful extensions: 54147
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50187
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
