Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002270A_C01 KMC002270A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM19210.1|AF378125_1 GAI-like protein 1 [Vitis vinifera] 181 6e-45
emb|CAA72178.1| RGA2 protein [Arabidopsis thaliana] 175 6e-43
emb|CAA75492.1| GAI [Arabidopsis thaliana] 175 6e-43
ref|NP_172945.1| signal response protein (GAI); protein id: At1g... 175 6e-43
emb|CAB51555.1| gibberellin response modulator [Triticum aestivum] 170 2e-41
>gb|AAM19210.1|AF378125_1 GAI-like protein 1 [Vitis vinifera]
Length = 590
Score = 181 bits (460), Expect = 6e-45
Identities = 84/96 (87%), Positives = 92/96 (95%)
Frame = -1
Query: 634 QDVVMTEVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQASML 455
QD +M+EVYLG+QICNVVACEG +RVERHETL QWR R+GSAGF+PV+LGSNAFKQASML
Sbjct: 481 QDKLMSEVYLGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASML 540
Query: 454 LALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKL 347
LALFAGGDGYRVEENNGCLMLGWHTRPLIATSAW+L
Sbjct: 541 LALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQL 576
>emb|CAA72178.1| RGA2 protein [Arabidopsis thaliana]
Length = 532
Score = 175 bits (443), Expect = 6e-43
Identities = 82/98 (83%), Positives = 89/98 (90%)
Frame = -1
Query: 640 SGQDVVMTEVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQAS 461
SGQD VM+EVYLG+QICNVVAC+G DRVERHETL QWR R GSAGF H+GSNAFKQAS
Sbjct: 432 SGQDKVMSEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQAS 491
Query: 460 MLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKL 347
MLLALF GG+GYRVEE++GCLMLGWHTRPLIATSAWKL
Sbjct: 492 MLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWKL 529
>emb|CAA75492.1| GAI [Arabidopsis thaliana]
Length = 532
Score = 175 bits (443), Expect = 6e-43
Identities = 82/98 (83%), Positives = 89/98 (90%)
Frame = -1
Query: 640 SGQDVVMTEVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQAS 461
SGQD VM+EVYLG+QICNVVAC+G DRVERHETL QWR R GSAGF H+GSNAFKQAS
Sbjct: 432 SGQDKVMSEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQAS 491
Query: 460 MLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKL 347
MLLALF GG+GYRVEE++GCLMLGWHTRPLIATSAWKL
Sbjct: 492 MLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWKL 529
>ref|NP_172945.1| signal response protein (GAI); protein id: At1g14920.1, supported
by cDNA: gi_16648833 [Arabidopsis thaliana]
gi|25366590|pir||H86282 protein F10B6.34 [imported] -
Arabidopsis thaliana
gi|8778219|gb|AAF79228.1|AC006917_13 F10B6.34
[Arabidopsis thaliana] gi|16648834|gb|AAL25607.1|
At1g14920/F10B6_15 [Arabidopsis thaliana]
gi|22655348|gb|AAM98266.1| At1g14920/F10B6_15
[Arabidopsis thaliana]
Length = 533
Score = 175 bits (443), Expect = 6e-43
Identities = 82/98 (83%), Positives = 89/98 (90%)
Frame = -1
Query: 640 SGQDVVMTEVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQAS 461
SGQD VM+EVYLG+QICNVVAC+G DRVERHETL QWR R GSAGF H+GSNAFKQAS
Sbjct: 433 SGQDKVMSEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQAS 492
Query: 460 MLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKL 347
MLLALF GG+GYRVEE++GCLMLGWHTRPLIATSAWKL
Sbjct: 493 MLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWKL 530
>emb|CAB51555.1| gibberellin response modulator [Triticum aestivum]
Length = 623
Score = 170 bits (430), Expect = 2e-41
Identities = 79/108 (73%), Positives = 89/108 (82%)
Frame = -1
Query: 661 ASTGSDSSGQDVVMTEVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGS 482
A+ ++G D VM+EVYLG QICNVVACEG +R ERHETL QWR R+G+AGF VHLGS
Sbjct: 516 AAAAPAAAGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVHLGS 575
Query: 481 NAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPQP 338
NA+KQAS LLALFAGGDGY+VEE GCL LGWHTRPLIATSAW+L P
Sbjct: 576 NAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAGP 623
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 641,349,606
Number of Sequences: 1393205
Number of extensions: 15942221
Number of successful extensions: 64330
Number of sequences better than 10.0: 304
Number of HSP's better than 10.0 without gapping: 53598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63186
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
