Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002265A_C01 KMC002265A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198790.1| ribosomal protein L5 - like; protein id: At5g39... 312 2e-84
gb|AAM64753.1| ribosomal protein, putative [Arabidopsis thaliana] 312 2e-84
ref|NP_566767.1| ribosomal protein, putative; protein id: At3g25... 312 2e-84
sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5 300 1e-80
pir||S39486 ribosomal protein L5 - rice 300 1e-80
>ref|NP_198790.1| ribosomal protein L5 - like; protein id: At5g39740.1, supported by
cDNA: gi_19310481, supported by cDNA: gi_20260447
[Arabidopsis thaliana] gi|19884108|sp|P49227|RL5_ARATH
60S ribosomal protein L5 gi|10177974|dbj|BAB11380.1| 60S
ribosomal protein L5 [Arabidopsis thaliana]
gi|19310482|gb|AAL84975.1| AT5g39740/MKM21_30
[Arabidopsis thaliana] gi|20260448|gb|AAM13122.1|
ribosomal protein L5 - like [Arabidopsis thaliana]
Length = 301
Score = 312 bits (800), Expect = 2e-84
Identities = 153/174 (87%), Positives = 165/174 (93%)
Frame = +1
Query: 43 MVFVKSQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYSTPKYRFVVRFTNKDI 222
MVFVKS KS AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKY+TPKYRFVVRFTNKDI
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 223 TAQIVSATIAGDIVLASAYAHELPRYGLEIGLTNYAAAYCTGLLLARRTLQKLEMDEEYE 402
AQIVSA+IAGDIV ASAYAHELP+YGL +GLTNYAAAYCTGLLLARR L+ LEMD+EYE
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 403 GNVEATGEDFSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGA*DGGMDIPH 564
GNVEATGEDFSVEP ++RRPFRALLDVGLI+TTTGNRVFGALKGA DGG+DIPH
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPH 174
>gb|AAM64753.1| ribosomal protein, putative [Arabidopsis thaliana]
Length = 301
Score = 312 bits (799), Expect = 2e-84
Identities = 153/174 (87%), Positives = 165/174 (93%)
Frame = +1
Query: 43 MVFVKSQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYSTPKYRFVVRFTNKDI 222
MVFVKS KS AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKY+TPKYRFVVRFTNKDI
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 223 TAQIVSATIAGDIVLASAYAHELPRYGLEIGLTNYAAAYCTGLLLARRTLQKLEMDEEYE 402
AQIVSA+IAGDIV ASAYAHELP+YGL +GLTNYAAAYCTGLLLARR L+ LEMD+EYE
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 403 GNVEATGEDFSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGA*DGGMDIPH 564
GNVEATGEDFSVEP ++RRPFRALLDVGLI+TTTGNRVFGALKGA DGG+DIPH
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPH 174
>ref|NP_566767.1| ribosomal protein, putative; protein id: At3g25520.1, supported by
cDNA: 32753., supported by cDNA: gi_15809787, supported
by cDNA: gi_17473631 [Arabidopsis thaliana]
gi|15809788|gb|AAL06822.1| AT5g39740/MKM21_30
[Arabidopsis thaliana] gi|17473632|gb|AAL38279.1| 60S
ribosomal protein L5 [Arabidopsis thaliana]
gi|20148745|gb|AAM10263.1| 60S ribosomal protein L5
[Arabidopsis thaliana] gi|22530962|gb|AAM96985.1|
putative ribosomal protein [Arabidopsis thaliana]
gi|23198406|gb|AAN15730.1| putative ribosomal protein
[Arabidopsis thaliana] gi|27311643|gb|AAO00787.1|
ribosomal protein, putative [Arabidopsis thaliana]
Length = 301
Score = 312 bits (799), Expect = 2e-84
Identities = 153/174 (87%), Positives = 165/174 (93%)
Frame = +1
Query: 43 MVFVKSQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYSTPKYRFVVRFTNKDI 222
MVFVKS KS AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKY+TPKYRFVVRFTNKDI
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 223 TAQIVSATIAGDIVLASAYAHELPRYGLEIGLTNYAAAYCTGLLLARRTLQKLEMDEEYE 402
AQIVSA+IAGDIV ASAYAHELP+YGL +GLTNYAAAYCTGLLLARR L+ LEMD+EYE
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 403 GNVEATGEDFSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGA*DGGMDIPH 564
GNVEATGEDFSVEP ++RRPFRALLDVGLI+TTTGNRVFGALKGA DGG+DIPH
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPH 174
>sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5
Length = 304
Score = 300 bits (767), Expect = 1e-80
Identities = 144/172 (83%), Positives = 162/172 (93%)
Frame = +1
Query: 49 FVKSQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYSTPKYRFVVRFTNKDITA 228
FVK+QK+ AY+KR+QVKFKRRR+GKTDYRARIRL NQDKNKY+TPKYRFVVRFTNKDITA
Sbjct: 4 FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITA 63
Query: 229 QIVSATIAGDIVLASAYAHELPRYGLEIGLTNYAAAYCTGLLLARRTLQKLEMDEEYEGN 408
QIV ATIAGDIV+A+AY+HELPRYGLE+GLTNYAAAYCTGLLLARR L+ +D+EYEGN
Sbjct: 64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGN 123
Query: 409 VEATGEDFSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGA*DGGMDIPH 564
+EATGED+ VEPA+ RRPFRALLDVGLI+TTTGNRVFGALKGA DGG+DIPH
Sbjct: 124 IEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPH 175
>pir||S39486 ribosomal protein L5 - rice
Length = 294
Score = 300 bits (767), Expect = 1e-80
Identities = 144/172 (83%), Positives = 162/172 (93%)
Frame = +1
Query: 49 FVKSQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYSTPKYRFVVRFTNKDITA 228
FVK+QK+ AY+KR+QVKFKRRR+GKTDYRARIRL NQDKNKY+TPKYRFVVRFTNKDITA
Sbjct: 4 FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITA 63
Query: 229 QIVSATIAGDIVLASAYAHELPRYGLEIGLTNYAAAYCTGLLLARRTLQKLEMDEEYEGN 408
QIV ATIAGDIV+A+AY+HELPRYGLE+GLTNYAAAYCTGLLLARR L+ +D+EYEGN
Sbjct: 64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGN 123
Query: 409 VEATGEDFSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGA*DGGMDIPH 564
+EATGED+ VEPA+ RRPFRALLDVGLI+TTTGNRVFGALKGA DGG+DIPH
Sbjct: 124 IEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPH 175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,976,852
Number of Sequences: 1393205
Number of extensions: 12383515
Number of successful extensions: 37632
Number of sequences better than 10.0: 174
Number of HSP's better than 10.0 without gapping: 35313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37378
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
