Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002262A_C01 KMC002262A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultiva... 104 7e-22
emb|CAD48198.1| RNA-binding protein [Medicago truncatula] 92 6e-18
dbj|BAC42194.1| unknown protein [Arabidopsis thaliana] 82 6e-15
pir||C86346 F16F4.3 protein - Arabidopsis thaliana gi|8920632|gb... 66 3e-10
ref|NP_173554.1| hypothetical protein; protein id: At1g21320.1 [... 65 6e-10
>dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultivar-group)]
Length = 293
Score = 104 bits (260), Expect = 7e-22
Identities = 53/75 (70%), Positives = 60/75 (79%), Gaps = 1/75 (1%)
Frame = -2
Query: 567 EVRLVSKESRPPGGDPLLLCFVDFESPAHAATAKDALQGYKFDELDRNSANLRFQFARYP 388
EVRLVSKE+R PGGDP+LLCFVDFE+ + AA A DALQGYKFDE DRNS +LR QFAR+
Sbjct: 219 EVRLVSKEARHPGGDPILLCFVDFETASQAAIAMDALQGYKFDEHDRNSPHLRLQFARFT 278
Query: 387 GARSGGG-GGFRGKR 346
G R G G GG R +R
Sbjct: 279 GPRGGSGPGGGRVRR 293
>emb|CAD48198.1| RNA-binding protein [Medicago truncatula]
Length = 261
Score = 91.7 bits (226), Expect = 6e-18
Identities = 46/67 (68%), Positives = 55/67 (81%)
Frame = -2
Query: 567 EVRLVSKESRPPGGDPLLLCFVDFESPAHAATAKDALQGYKFDELDRNSANLRFQFARYP 388
EVRLVSKE++ G DPL+LCFVDF +PA AATA ALQGYK DE++ S++LR QF+RYP
Sbjct: 179 EVRLVSKEAKHRG-DPLILCFVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYP 237
Query: 387 GARSGGG 367
G RSGGG
Sbjct: 238 GPRSGGG 244
>dbj|BAC42194.1| unknown protein [Arabidopsis thaliana]
Length = 156
Score = 81.6 bits (200), Expect = 6e-15
Identities = 40/68 (58%), Positives = 51/68 (74%)
Frame = -2
Query: 567 EVRLVSKESRPPGGDPLLLCFVDFESPAHAATAKDALQGYKFDELDRNSANLRFQFARYP 388
EVRLV+K+S+ GDP++LCFVDF +PA AATA ALQGY+ DE + +S LR QF+R P
Sbjct: 87 EVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKP 146
Query: 387 GARSGGGG 364
G+R G G
Sbjct: 147 GSRPGQRG 154
>pir||C86346 F16F4.3 protein - Arabidopsis thaliana
gi|8920632|gb|AAF81354.1|AC036104_3 Contains weak
similarity to bab503 major core protein from Simian
T-cell lymphotrophic virus type 1 gb|AF230486.
[Arabidopsis thaliana]
Length = 430
Score = 65.9 bits (159), Expect = 3e-10
Identities = 35/62 (56%), Positives = 40/62 (64%)
Frame = -2
Query: 540 RPPGGDPLLLCFVDFESPAHAATAKDALQGYKFDELDRNSANLRFQFARYPGARSGGGGG 361
R GDP +LCFVDFE+ A AATA ALQ Y+ DE + +S LR QF R PG R G GG
Sbjct: 337 RERSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRGG 396
Query: 360 FR 355
R
Sbjct: 397 RR 398
>ref|NP_173554.1| hypothetical protein; protein id: At1g21320.1 [Arabidopsis
thaliana]
Length = 381
Score = 65.1 bits (157), Expect = 6e-10
Identities = 34/58 (58%), Positives = 39/58 (66%)
Frame = -2
Query: 528 GDPLLLCFVDFESPAHAATAKDALQGYKFDELDRNSANLRFQFARYPGARSGGGGGFR 355
GDP +LCFVDFE+ A AATA ALQ Y+ DE + +S LR QF R PG R G GG R
Sbjct: 312 GDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRGGRR 369
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,631,493
Number of Sequences: 1393205
Number of extensions: 10331185
Number of successful extensions: 40959
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 34511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40113
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
