Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002261A_C01 KMC002261A_c01
(442 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO51370.1| similar to Dictyostelium discoideum (Slime mold).... 36 0.12
ref|NP_640331.1| structural polyprotein [Western equine encephal... 35 0.16
sp|P13897|POLS_WEEV Structural polyprotein (P130) [Contains: Coa... 34 0.36
dbj|BAC28178.1| unnamed protein product [Mus musculus] 34 0.36
ref|NP_291043.1| lymphoid nuclear protein related to AF4-like [M... 34 0.36
>gb|AAO51370.1| similar to Dictyostelium discoideum (Slime mold). Adenylyl cyclase
Length = 1400
Score = 35.8 bits (81), Expect = 0.12
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +1
Query: 79 TLKKSTIAKI-NAKKRVLINEDLYRTPQKKKN--PTRTLSIYSQKSYTKSGTQEQSQKE* 249
T +K I K+ N KK+ ++ +D + +KK+N + L ++ K T+ Q+Q Q++
Sbjct: 710 TKQKKKIKKLENEKKQKVLQQDKQQEKEKKQNYQQPQDLQQHNLKIQTQQQQQQQQQQQQ 769
Query: 250 KETLPQQ*TAQREQDQNTKNDQDNR 324
++ QQ Q++Q Q + Q +
Sbjct: 770 QQQQQQQQQQQQQQQQQQQQQQSQQ 794
>ref|NP_640331.1| structural polyprotein [Western equine encephalomyelitis virus]
gi|6760412|gb|AAF28340.1| structural polyprotein
[Western equine encephalomyelitis virus]
Length = 1236
Score = 35.4 bits (80), Expect = 0.16
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = +2
Query: 152 PPKKRKTRPGP*AYTLKRAIQNQVPRNKAKRNKRKPFHSNKQPKESKIKIPKTIKTTDDS 331
PPKK+K+ P P + Q + + +AKR KRKP +Q K++ KT +
Sbjct: 65 PPKKKKSAPKP------KPTQPKKKKQQAKRTKRKPKPGKRQRMCMKLESDKTFPIMLNG 118
Query: 332 RNPFQGLA*PLRRCSFQTPAPKPCHVKGTVQKQ 430
+ G A C KP HV+G + +
Sbjct: 119 Q--VNGYA-----CVVGGRLMKPLHVEGKIDNE 144
>sp|P13897|POLS_WEEV Structural polyprotein (P130) [Contains: Coat protein C (Capsid
protein C); Spike glycoprotein E3; Spike glycoprotein
E2; 6 kDa peptide; Spike glycoprotein E1]
gi|74514|pir||VHWVWE structural polyprotein - western
equine encephalomyelitis virus (strain BFS1703)
gi|323730|gb|AAA42999.1| envelope polyprotein
Length = 1236
Score = 34.3 bits (77), Expect = 0.36
Identities = 26/93 (27%), Positives = 41/93 (43%)
Frame = +2
Query: 152 PPKKRKTRPGP*AYTLKRAIQNQVPRNKAKRNKRKPFHSNKQPKESKIKIPKTIKTTDDS 331
PPKK+K+ P P + Q + + +AK+ KRKP +Q K++ KT +
Sbjct: 65 PPKKKKSAPKP------KPTQPKKKKQQAKKTKRKPKPGKRQRMCMKLESDKTFPIMLNG 118
Query: 332 RNPFQGLA*PLRRCSFQTPAPKPCHVKGTVQKQ 430
+ G A C KP HV+G + +
Sbjct: 119 Q--VNGYA-----CVVGGRLMKPLHVEGKIDNE 144
>dbj|BAC28178.1| unnamed protein product [Mus musculus]
Length = 325
Score = 34.3 bits (77), Expect = 0.36
Identities = 29/105 (27%), Positives = 46/105 (43%)
Frame = +1
Query: 85 KKSTIAKINAKKRVLINEDLYRTPQKKKNPTRTLSIYSQKSYTKSGTQEQSQKE*KETLP 264
K+++ N KR N+D R + KK T + K + + +QS + K+ LP
Sbjct: 145 KQASEKASNKGKRKHKNDDDTRASESKKPKTEDKNSSGHKPSSSRESSKQSSTKEKDLLP 204
Query: 265 QQ*TAQREQDQNTKNDQDNR*FSKSFSRPCIATSSLLLSNTSSKT 399
+D T++ R S+S S TSS S +SSK+
Sbjct: 205 SPAGPILSKDSKTEHGSRKRTVSQSSSLKSSGTSSKENSGSSSKS 249
>ref|NP_291043.1| lymphoid nuclear protein related to AF4-like [Mus musculus]
gi|25071851|ref|XP_192690.1| lymphoid nuclear protein
related to AF4-like [Mus musculus]
gi|10441622|gb|AAG17126.1|AF190449_1 putative
transcription factor ALF-4 [Mus musculus]
Length = 1160
Score = 34.3 bits (77), Expect = 0.36
Identities = 29/105 (27%), Positives = 46/105 (43%)
Frame = +1
Query: 85 KKSTIAKINAKKRVLINEDLYRTPQKKKNPTRTLSIYSQKSYTKSGTQEQSQKE*KETLP 264
K+++ N KR N+D R + KK T + K + + +QS + K+ LP
Sbjct: 749 KQASEKASNKGKRKHKNDDDTRASESKKPKTEDKNSSGHKPSSSRESSKQSSTKEKDLLP 808
Query: 265 QQ*TAQREQDQNTKNDQDNR*FSKSFSRPCIATSSLLLSNTSSKT 399
+D T++ R S+S S TSS S +SSK+
Sbjct: 809 SPAGPILSKDSKTEHGSRKRTVSQSSSLKSSGTSSKENSGSSSKS 853
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,657,117
Number of Sequences: 1393205
Number of extensions: 8480503
Number of successful extensions: 37838
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 35458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37584
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
