Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002260A_C01 KMC002260A_c01
(716 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86891.1| syringolide-induced protein 14-1-1 [Glycine max] 155 5e-37
ref|NP_565125.1| expressed protein; protein id: At1g76070.1, sup... 95 1e-18
gb|AAM65454.1| unknown [Arabidopsis thaliana] 95 1e-18
ref|NP_564111.1| expressed protein; protein id: At1g20310.1, sup... 54 3e-06
pir||G86336 hypothetical protein F14O10.9 - Arabidopsis thaliana... 53 4e-06
>dbj|BAB86891.1| syringolide-induced protein 14-1-1 [Glycine max]
Length = 257
Score = 155 bits (392), Expect = 5e-37
Identities = 90/140 (64%), Positives = 100/140 (71%), Gaps = 11/140 (7%)
Frame = -1
Query: 713 MLFHAAKQPKSAGRKSDASSA-----------EREAPHMSQMKRFSSGRDAFSSFDWKAE 567
+LFH AK PKS GRKS+AS+ AP +SQM+RFSSGRDA + FDWK
Sbjct: 124 LLFHGAK-PKSEGRKSNASAPGDINKDLALADAARAPRVSQMRRFSSGRDALAEFDWKVS 182
Query: 566 MAAEEIHIDDYYSDEDRVVESDGDEEEERIIIPFSAPMLIGGGAGGGCVAHGDVLNLKPR 387
EEI DYYSDE RV +SDG+EEEE IIIPFSAP+L+GGG G G VLNLKPR
Sbjct: 183 PDEEEI---DYYSDEYRV-DSDGEEEEE-IIIPFSAPLLVGGGVGH---TRGGVLNLKPR 234
Query: 386 KEINLWKRRTMAPPRPLQLD 327
KEINLWKRRTMAPPRPLQLD
Sbjct: 235 KEINLWKRRTMAPPRPLQLD 254
>ref|NP_565125.1| expressed protein; protein id: At1g76070.1, supported by cDNA:
39494. [Arabidopsis thaliana]
gi|6573705|gb|AAF17625.1|AC009978_1 T23E18.1
[Arabidopsis thaliana] gi|27808544|gb|AAO24552.1|
At1g76070 [Arabidopsis thaliana]
Length = 272
Score = 94.7 bits (234), Expect = 1e-18
Identities = 53/110 (48%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Frame = -1
Query: 638 PHMSQMKRFSSGRDAFSSFDWKAEMAAEEI----HIDDYYSDEDR---VVESDGDEEEER 480
P + QMK+F+S RDA FDW EM EE H YYSD+D + D DE+E+
Sbjct: 177 PSLGQMKKFASSRDALGDFDWAVEMKHEEESPADHHRGYYSDDDTRGAYLRYDDDEDEDD 236
Query: 479 IIIPFSAPMLIGGGAGGGCVAHGDVLNLKPRKEINLWKRRTMAPPRPLQL 330
IIIPFSAP L LKP+KE+NLWKRRTM PP+PL L
Sbjct: 237 IIIPFSAP-----------------LGLKPKKEVNLWKRRTMDPPKPLHL 269
>gb|AAM65454.1| unknown [Arabidopsis thaliana]
Length = 252
Score = 94.7 bits (234), Expect = 1e-18
Identities = 53/110 (48%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Frame = -1
Query: 638 PHMSQMKRFSSGRDAFSSFDWKAEMAAEEI----HIDDYYSDEDR---VVESDGDEEEER 480
P + QMK+F+S RDA FDW EM EE H YYSD+D + D DE+E+
Sbjct: 157 PSLGQMKKFASSRDALGDFDWAVEMKHEEESPADHHRGYYSDDDTRGAYLRYDDDEDEDD 216
Query: 479 IIIPFSAPMLIGGGAGGGCVAHGDVLNLKPRKEINLWKRRTMAPPRPLQL 330
IIIPFSAP L LKP+KE+NLWKRRTM PP+PL L
Sbjct: 217 IIIPFSAP-----------------LGLKPKKEVNLWKRRTMDPPKPLHL 249
>ref|NP_564111.1| expressed protein; protein id: At1g20310.1, supported by cDNA:
8562. [Arabidopsis thaliana] gi|21617898|gb|AAM66948.1|
unknown [Arabidopsis thaliana]
Length = 240
Score = 53.5 bits (127), Expect = 3e-06
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = -1
Query: 641 APHMSQMKRFSSGRDAFSSFDWKAEMAAEEIHIDDYYSDEDRVVESDGDEEEERIIIPFS 462
AP + MK+F+S R+A FDW +M E+E ++IP S
Sbjct: 164 APSLGAMKKFASSREALGGFDWTVQMK----------------------REKEDVMIPCS 201
Query: 461 APMLIGGGAGGGCVAHGDVLNL--KPRKEINLWKRRTMAPPRPLQL 330
G + + L+L KP+ E+NLWKRRTM P+PLQ+
Sbjct: 202 V---------GIPLTQLEDLSLCPKPKSEVNLWKRRTMDRPKPLQV 238
>pir||G86336 hypothetical protein F14O10.9 - Arabidopsis thaliana
gi|9558595|gb|AAF88158.1|AC026234_9 Contains similarity
to a hypothetical protein T23E18.1 gi|6573705 from
Arabidopsis thaliana BAC T23E18 gb|AC009978
Length = 313
Score = 53.1 bits (126), Expect = 4e-06
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = -1
Query: 641 APHMSQMKRFSSGRDAFSSFDWKAEMAAEEIHIDDYYSDEDRVVESDGDEEEERIIIPFS 462
AP + MK+F+S R+A FDW +M E+E ++IP S
Sbjct: 164 APSLGAMKKFASSREALGGFDWTVQMK----------------------REKEDVMIPCS 201
Query: 461 APMLIGGGAGGGCVAHGDVLNL--KPRKEINLWKRRTMAPPRPLQ 333
G + + L+L KP+ E+NLWKRRTM P+PLQ
Sbjct: 202 V---------GIPLTQLEDLSLCPKPKSEVNLWKRRTMDRPKPLQ 237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,615,686
Number of Sequences: 1393205
Number of extensions: 13950472
Number of successful extensions: 102024
Number of sequences better than 10.0: 563
Number of HSP's better than 10.0 without gapping: 58734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84630
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
