Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002258A_C01 KMC002258A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK44146.1|AF370331_1 unknown protein [Arabidopsis thaliana] ... 92 4e-18
dbj|BAC42663.1| unknown protein [Arabidopsis thaliana] gi|284167... 91 1e-17
ref|NP_189052.1| unknown protein; protein id: At3g24100.1 [Arabi... 84 1e-15
ref|NP_732133.1| CG17931-PA [Drosophila melanogaster] gi|2339685... 47 2e-04
ref|NP_609888.2| CG10333-PA [Drosophila melanogaster] gi|2294675... 45 6e-04
>gb|AAK44146.1|AF370331_1 unknown protein [Arabidopsis thaliana] gi|23296709|gb|AAN13152.1|
unknown protein [Arabidopsis thaliana]
Length = 69
Score = 92.0 bits (227), Expect = 4e-18
Identities = 48/70 (68%), Positives = 57/70 (80%), Gaps = 1/70 (1%)
Frame = -3
Query: 466 MSRGSQRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDARALQEKAARKAGQ-AGGNNA 290
M+RGSQR+RDRERA AR GGK K K+DGLTPEQRRERDA+ALQEK A+KA Q A ++
Sbjct: 1 MTRGSQRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASS 59
Query: 289 GGGGGAGKSR 260
GGGGG G ++
Sbjct: 60 GGGGGKGNNK 69
>dbj|BAC42663.1| unknown protein [Arabidopsis thaliana] gi|28416731|gb|AAO42896.1|
At4g13612 [Arabidopsis thaliana]
Length = 71
Score = 90.9 bits (224), Expect = 1e-17
Identities = 49/72 (68%), Positives = 56/72 (77%)
Frame = -3
Query: 466 MSRGSQRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDARALQEKAARKAGQAGGNNAG 287
M+RGSQR+RDRERA ARAGGK K +DGLTPEQRRERD +ALQEKAA+KA QA G ++G
Sbjct: 1 MTRGSQRERDRERAAARAGGKGKNG-DDGLTPEQRRERDGKALQEKAAKKAAQAAGASSG 59
Query: 286 GGGGAGKSRQEK 251
G G GK K
Sbjct: 60 GAAG-GKGAAAK 70
>ref|NP_189052.1| unknown protein; protein id: At3g24100.1 [Arabidopsis thaliana]
Length = 85
Score = 84.0 bits (206), Expect = 1e-15
Identities = 44/65 (67%), Positives = 52/65 (79%), Gaps = 1/65 (1%)
Frame = -3
Query: 451 QRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDARALQEKAARKAGQ-AGGNNAGGGGG 275
QR+RDRERA AR GGK K K+DGLTPEQRRERDA+ALQEK A+KA Q A ++GGGGG
Sbjct: 22 QRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSGGGGG 80
Query: 274 AGKSR 260
G ++
Sbjct: 81 KGNNK 85
>ref|NP_732133.1| CG17931-PA [Drosophila melanogaster]
gi|23396857|sp|Q9VEW2|SERL_DROME Putative SERF-like
protein gi|7300138|gb|AAF55305.1| CG17931-PA [Drosophila
melanogaster]
Length = 60
Score = 47.0 bits (110), Expect = 2e-04
Identities = 23/59 (38%), Positives = 34/59 (56%)
Frame = -3
Query: 466 MSRGSQRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDARALQEKAARKAGQAGGNNA 290
M+RG+QRD R++ Q + TK + D LT EQR+ RDA ++EK +K A +
Sbjct: 1 MTRGNQRDLARQKNQKKQADLTKGKRTDNLTVEQRKARDAELMREKQKKKEEAAAAGTS 59
>ref|NP_609888.2| CG10333-PA [Drosophila melanogaster] gi|22946759|gb|AAF53680.2|
CG10333-PA [Drosophila melanogaster]
Length = 822
Score = 45.1 bits (105), Expect = 6e-04
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = -3
Query: 469 IMSRGSQRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDARALQEKAARKAGQAGGNNA 290
+ R Q DR++ER Q R+ ++++ +N +PE++R RD ++E++ + G AGG
Sbjct: 35 VRERDRQFDREKERRQRRS--RSREDRNRRRSPERQRPRDN--VRERSRERGGGAGG--- 87
Query: 289 GGGGGAGK 266
GGGGGA K
Sbjct: 88 GGGGGAEK 95
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,190,564
Number of Sequences: 1393205
Number of extensions: 13129318
Number of successful extensions: 126792
Number of sequences better than 10.0: 478
Number of HSP's better than 10.0 without gapping: 63113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108063
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
