Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002257A_C01 KMC002257A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04903|PFTB_PEA Protein farnesyltransferase beta subunit (CAA... 178 3e-44
dbj|BAB89459.1| putative farnesyltranstransferase [Oryza sativa ... 136 2e-31
gb|AAB38796.1| farnesyltransferase beta subunit [Nicotiana gluti... 129 3e-29
pir||T07605 protein farnesyltransferase (EC 2.5.1.-) beta chain ... 126 2e-28
pir||T07673 farnesyltranstransferase (EC 2.5.1.29) chain B - tom... 123 1e-27
>sp|Q04903|PFTB_PEA Protein farnesyltransferase beta subunit (CAAX farnesyltransferase
beta subunit) (RAS proteins prenyltransferase beta)
(FTase-beta) gi|541966|pir||JQ2254 farnesyl-diphosphate
farnesyltransferase (EC 2.5.1.21) beta chain - garden
pea gi|169049|gb|AAA33649.1| farnesyl-protein
transferase beta-subunit
Length = 419
Score = 178 bits (452), Expect = 3e-44
Identities = 79/89 (88%), Positives = 86/89 (95%)
Frame = -2
Query: 552 HSIALLRHILLCSQDQDGGLRDKPGKRRDHYHTCYCLSGLSVCPYSWSKHPDSPPLPKVV 373
HSIAL ++ILLCSQ+QDGGLRDKPGKRRDHYH+CYCLSGLS+C YSWSK PDSPPLPKVV
Sbjct: 328 HSIALQQYILLCSQEQDGGLRDKPGKRRDHYHSCYCLSGLSLCQYSWSKRPDSPPLPKVV 387
Query: 372 LGPYSNLLEPIHPLFNVVLERYREAHEFF 286
+GPYSNLLEPIHPLFNVVL+RYREAHEFF
Sbjct: 388 MGPYSNLLEPIHPLFNVVLDRYREAHEFF 416
>dbj|BAB89459.1| putative farnesyltranstransferase [Oryza sativa (japonica
cultivar-group)]
Length = 539
Score = 136 bits (342), Expect = 2e-31
Identities = 63/89 (70%), Positives = 74/89 (82%)
Frame = -2
Query: 552 HSIALLRHILLCSQDQDGGLRDKPGKRRDHYHTCYCLSGLSVCPYSWSKHPDSPPLPKVV 373
H+IAL ++ILLC+Q DGGLRDKPGK RDHYH+CYCLSGLSV YS D+ PLP+ V
Sbjct: 449 HNIALQQYILLCAQVLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAMVDSDACPLPQHV 508
Query: 372 LGPYSNLLEPIHPLFNVVLERYREAHEFF 286
LGPYSNLLEPIHPL+NVVL++Y A+EFF
Sbjct: 509 LGPYSNLLEPIHPLYNVVLDKYHTAYEFF 537
>gb|AAB38796.1| farnesyltransferase beta subunit [Nicotiana glutinosa]
Length = 446
Score = 129 bits (323), Expect = 3e-29
Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Frame = -2
Query: 549 SIALLRHILLCSQDQDGGLRDKPGKRRDHYHTCYCLSGLSVCPYSWSKHPDSPPLPKVVL 370
S L +++LLCSQ DGG RDKPGK RDHYHTCYCLSGLS+ YSW+ D+PPLP+ V
Sbjct: 356 SFYLQQYVLLCSQI-DGGFRDKPGKGRDHYHTCYCLSGLSIAQYSWTNEADAPPLPRDVF 414
Query: 369 GPYS-NLLEPIHPLFNVVLERYREAHEFF 286
GPYS NLLE IHPL+NVVL+RY EA FF
Sbjct: 415 GPYSQNLLEQIHPLYNVVLDRYYEARSFF 443
>pir||T07605 protein farnesyltransferase (EC 2.5.1.-) beta chain - tomato
gi|2182815|gb|AAB69757.1| farnesyl-protein transferase
beta subunit [Lycopersicon esculentum]
Length = 470
Score = 126 bits (317), Expect = 2e-28
Identities = 58/88 (65%), Positives = 70/88 (78%), Gaps = 1/88 (1%)
Frame = -2
Query: 549 SIALLRHILLCSQDQDGGLRDKPGKRRDHYHTCYCLSGLSVCPYSWSKHPDSPPLPKVVL 370
S+ L +++LLCSQ + GG RDKPGK RD+YHTCYCLSGLS+ YSW+ DSPPLP+ V
Sbjct: 364 SMYLQQYVLLCSQIEVGGFRDKPGKGRDYYHTCYCLSGLSIAQYSWTDEADSPPLPRDVF 423
Query: 369 GPYSN-LLEPIHPLFNVVLERYREAHEF 289
GPYS LLE +HPLFNVVL+RY EA E+
Sbjct: 424 GPYSKCLLEQVHPLFNVVLDRYYEAREY 451
>pir||T07673 farnesyltranstransferase (EC 2.5.1.29) chain B - tomato
gi|1815668|gb|AAC49666.1| farnesyl protein transferase
subunit B [Lycopersicon esculentum]
Length = 470
Score = 123 bits (309), Expect = 1e-27
Identities = 57/88 (64%), Positives = 69/88 (77%), Gaps = 1/88 (1%)
Frame = -2
Query: 549 SIALLRHILLCSQDQDGGLRDKPGKRRDHYHTCYCLSGLSVCPYSWSKHPDSPPLPKVVL 370
S+ L +++LLCSQ + GG RDKPGK RD+YHTCYCLSGLS+ YSW+ DS PLP+ V
Sbjct: 364 SMYLQQYVLLCSQIEVGGFRDKPGKGRDYYHTCYCLSGLSIAQYSWTDEADSTPLPRDVF 423
Query: 369 GPYSN-LLEPIHPLFNVVLERYREAHEF 289
GPYS LLE +HPLFNVVL+RY EA E+
Sbjct: 424 GPYSKCLLEQVHPLFNVVLDRYYEAREY 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,040,726
Number of Sequences: 1393205
Number of extensions: 10155718
Number of successful extensions: 22934
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 22314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22912
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
